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In order to provide accurate and economic concentration measures during aerobic and anoxic phases, a cascade high gain observer (HGO) approach is developed. Only two concentrations are available; the other process's states are assumed unavailable. The observer converges asymptotically and it leads to a good estimation of the unavailable states which are the ammonia and substrate concentration, as well as a quite reconstruction of the unknown inputs, which are the influent ammonia and the influent substrate concentrations. 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