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The authors propose an explicit correspondence between these Lagrangian sections and holomorphic line bundles on toric Calabi-Yau manifolds.  The celebrated SYZ program gives a geometric understanding of mirror symmetry by taking duals of Lagrangian fibrations. Lagrangian torus fibrations on toric Calabi-Yau manifolds \\(\\check{X}\\) were constructed by the works of Goldstein and Gross, which are generalizations of the special Lagrangian fibration on \\(\\mathbb{C}^3\\) constructed by Harvey-Lawson. Lagrangian fibrations on the mirrors \\(X\\) were constructed by Abouzaid-Auroux-Katzarkov. In general, the base of a Lagrangian fibration has a tropical affine structure. By taking the tropical limit, the projection of a Lagrangian submanifold to the base should give a tropical submanifold.  Away from singular fibers, a Lagrangian fibration is essentially given as \\(T^*B/\\Lambda^*\\), where \\(\\Lambda^*\\) is a family of lattices in \\(T^*B\\) over \\(B\\). The graph of a closed one-form on \\(B\\) gives a Lagrangian section. In the case of mirrors of toric Calabi-Yau manifolds \\(\\check{X}\\), this can be encoded more combinatorially, namely it is constructed from a piecewise integral affine function supported on a polyhedral subdivision of the fan polytope. Note that such a combinatorial data also corresponds to a holomorphic line bundle over the toric Calabi-Yau manifolds \\(X\\).  This paper carries out these ideas in detail and successfully extends the sections over the whole SYZ base. It also constructs Lagrangian spheres in mirror toric Calabi-Yau manifolds \\(\\check{X}\\), which correspond to tropical submanifolds supported in chambers of the base. 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