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The embedding properties derived in [\\textit{T. Coulhon} et al., J. Fourier Anal. Appl. 18, No. 5, 995--1066 (2012; Zbl 1270.58015)] show that the spaces \\(B^{\\alpha}_{p,q}(M;D)\\) are indeed reproducing kernel Hilbert spaces for \\(p=q=2\\) and \\(\\sigma>0\\) large enough. An explicit representation of the reproducing kernel is defined by  \\[  K^{\\sigma}(x,y) = \\sum_{l=0}^{\\infty}b^{-2\\sigma l}S^{(l;\\sigma)}(x,y),  \\]  where \\(b>1\\) is a fixed parameter, \\(\\sigma>0\\) determines the smoothness, and \\(S^{(l;\\sigma)}\\) are integral kernels corresponding to operators defined via smooth functional calculus in terms of the operator \\(D\\). Stability estimates for the kernel, including inverse Bernstein-type estimates for kernel-based trial spaces, are given. 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