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A mixed integer programming model which comprehensively considers the handling procedures, noncrossing constraints, the safety margin and traveling time of gantry cranes, and the storage modes in the main area is formulated. A metaheuristic named backtracking search algorithm (BSA) is then improved to solve this intractable problem. A series of computational experiments are carried out to evaluate the performance of the proposed algorithm under some randomly generated cases based on the practical operation conditions. 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