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The complex systems often show complex dynamic behavior and uncertainty, which makes it difficult to establish a precise physical model. Therefore, the time series of complex systems are used to implement prediction in practice. Aiming at time series online prediction, we propose a new method to improve the prediction accuracy, which is based on the grey system theory and an incremental learning algorithm. In this method, the accumulated generating operation (AGO) with the raw time series is taken to improve the data quality and regularity firstly; then the prediction is conducted by a modified LS-SVR model, which simplifies the calculation process with incremental learning; finally, the inverse accumulated generating operation (IAGO) is performed to get the prediction results. The results of the prediction experiments indicate that the proposed scheme is an effective prediction approach for its good prediction precision and less computing time. 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