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It introduces the notions of Carath\u00e9odory functions in quaternionic analysis, alongside generalized positive functions, rational functions, (quaternionic) slice-hyperholomorphic functions (and rational), generalized positive functions and generalized positive even functions. The central result is for generalized positive even quaternionic square matrix valued slice-hyperholomorphic rational functions with a minimal realization to be factorizable by quaternionic square matrix valued slice-hyperholomorphic rational functions without poles and zeros in the open right half-space (and in the open left half-space, determined by an infinity condition). The paper tries to appeal to a wide audience  from theory of linear systems, hypercomplex analysis and electric engineering.  Section 2 treats the case of rational complex square matrix valued functions. 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