{"entities":{"Q27844":{"pageid":27900,"ns":120,"title":"Item:Q27844","lastrevid":105720209,"modified":"2026-10-15T10:56:01Z","type":"item","id":"Q27844","labels":{"en":{"language":"en","value":"ssizeRNA"}},"descriptions":{"en":{"language":"en","value":"Sample Size Calculation for RNA-Seq Experimental Design"}},"aliases":{},"claims":{"P13":[{"mainsnak":{"snaktype":"value","property":"P13","hash":"a0c34c296e87fc0f4f447bd34c168415ccd29714","datavalue":{"value":"15972","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q27844$568B4E8B-E77D-4479-8934-0E1E539F7CE4","rank":"normal"}],"P31":[{"mainsnak":{"snaktype":"value","property":"P31","hash":"438d0eef0223375d3a92def8ffc6a10a8bf1ca95","datavalue":{"value":{"entity-type":"item","numeric-id":57080,"id":"Q57080"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$B67DD271-ABFF-43A7-840A-3652E871635A","rank":"normal"}],"P132":[{"mainsnak":{"snaktype":"value","property":"P132","hash":"7dc5290ce837af0677b448318502fac7b628577f","datavalue":{"value":"1.3.2","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"4be5aa2d18c1883a2d6711c792709dd50e18427b","datavalue":{"value":{"time":"+2019-08-20T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$3F5D54D0-3A8A-4E4C-AC28-FB74C8EB61B1","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"b542975f358e64266fc8bf3287bc018a1e05a763","datavalue":{"value":"PACKAGES.rds","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"bdab782bc09c5c1d8687a0515dd3ffbe9dda94be","datavalue":{"value":{"time":"+2026-07-09T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$24B2EE6B-DA25-4002-8AD9-836333081AB1","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"eecdb3388001653deabd875ccccbed1dd62ef85c","datavalue":{"value":"1.1.1","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"22703aaabf2a7c3eda53a43e7dac0317268998e3","datavalue":{"value":{"time":"+2015-04-30T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$258F7880-1B14-4859-B968-22C217BB9F1F","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"72734bf087786b359178e01906763a60150a6b55","datavalue":{"value":"1.1.2","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"c74a80acbaba6ce7a83b1ea95034a1bd8502d7c8","datavalue":{"value":{"time":"+2015-05-12T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$CC55FBCE-02BF-42A1-BC79-A5F1B6A1CBD8","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"601afd83b047117b567ee7936a277df33dcfb79a","datavalue":{"value":"1.2.4","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"147be2d85a3bf23a139e8789988e8bc8c415a5e9","datavalue":{"value":{"time":"+2016-02-12T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$7AEC04F7-5197-45DB-93A6-3057F03A56E1","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"96525c921a579454d0e1aa9fd27a3cbc55e54d7f","datavalue":{"value":"1.2.6","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"78adf6e76276ee5d7f342d12b99cf64bd7a4e40c","datavalue":{"value":{"time":"+2016-07-15T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$C287CD42-C360-4B7C-9E77-70C54316D12F","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"9140a9f0a3e75042a72d8de98a59041b249bfea9","datavalue":{"value":"1.2.8","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"a9cbda1985b861ceef875f3a3e0c864a8aeb6f93","datavalue":{"value":{"time":"+2016-10-22T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$8E127BAA-EF28-45F1-9262-C2A33F7A876B","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"7c0acd01b6ca7ccf2cf39007e3fb970a8706f79f","datavalue":{"value":"1.2.9","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"96c4469c297efc472800ca775c30154d59865118","datavalue":{"value":{"time":"+2017-01-09T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$EA59790A-A34D-40E6-828C-DED5ED691D60","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"2f2982e2891b77a6b4f64ba89ad2d7a8319bdb66","datavalue":{"value":"1.3.1","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"90e6131927e2f821390d615ecfaa0e74b7083d76","datavalue":{"value":{"time":"+2019-02-19T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$17A75A6D-00D8-46A3-BB6D-8DDF4B599BBE","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"07ec388568b732aceec7c2d5f56cc38bacfa9f4f","datavalue":{"value":"1.3.3","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"3dc8ab23a6a7ec723c9668be4cb1d832b65d5c78","datavalue":{"value":{"time":"+2025-04-08T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q27844$5DE07152-D482-45C8-A7CA-784130B443CB","rank":"normal"}],"P16":[{"mainsnak":{"snaktype":"value","property":"P16","hash":"10f845de0e685c3ee65cc0a05d4e777ad8a2dba9","datavalue":{"value":{"entity-type":"item","numeric-id":143871,"id":"Q143871"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$B1E2CC78-9FB2-4F39-BE33-8AC7A81937E7","rank":"normal"}],"P19":[{"mainsnak":{"snaktype":"value","property":"P19","hash":"85a01458976458e4202f95a976facc773dc62bde","datavalue":{"value":{"entity-type":"item","numeric-id":143871,"id":"Q143871"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$B8CDB56C-259B-4FF5-8AF6-3E9579ECACE9","rank":"normal"}],"P163":[{"mainsnak":{"snaktype":"value","property":"P163","hash":"caec58e2e2e3256bca461f95da85075ecd3567cd","datavalue":{"value":{"entity-type":"item","numeric-id":56623,"id":"Q56623"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$9B56DAF0-4A66-47BE-9F25-DA76F5044592","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P163","hash":"8576d3d16efe97b9b62facebe80c3ed9e3b6aae2","datavalue":{"value":{"entity-type":"item","numeric-id":56621,"id":"Q56621"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","qualifiers":{"P232":[{"snaktype":"value","property":"P232","hash":"06f074efd5e7d7d06d7477e8ca68e18601234f9f","datavalue":{"value":{"text":"expanded from: GPL (\u2265 2)","language":"en"},"type":"monolingualtext"},"datatype":"monolingualtext"}]},"qualifiers-order":["P232"],"id":"Q27844$D61B3D92-2B40-4B22-AEFF-C241BE28AF35","rank":"normal"}],"P585":[{"mainsnak":{"snaktype":"value","property":"P585","hash":"ed0f0d6b05e4ce4fed7f0f5035862b2c26f8fb23","datavalue":{"value":{"entity-type":"item","numeric-id":57247,"id":"Q57247"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$9E5013DD-EE74-41CC-9705-97E47537BDA3","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"9502e80a35d29bfdd0edd2ecbb0f2075bf22c30b","datavalue":{"value":{"entity-type":"item","numeric-id":60759,"id":"Q60759"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$E53909D7-1FF0-4314-9619-B75BBB70A3F9","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"26e3d3d2327d7a78d3f39098589a1c7efa436dc6","datavalue":{"value":{"entity-type":"item","numeric-id":60762,"id":"Q60762"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$4ADA2B22-48A5-432C-B116-A4533F590349","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"42af530bba400cd42979b84ac1dd07bbdcaa3fb5","datavalue":{"value":{"entity-type":"item","numeric-id":106165,"id":"Q106165"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$445109E1-EA7B-4755-A817-6CDAE33315DD","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"763ab1af0d78af1e43710d686a298c3714e83ab4","datavalue":{"value":{"entity-type":"item","numeric-id":57371,"id":"Q57371"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$09D2BFB2-C989-4021-A5E7-9CE9E338D759","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"24c3e3d95d6aceb19323da214a060d1bb0535ab2","datavalue":{"value":{"entity-type":"item","numeric-id":57178,"id":"Q57178"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$C9D7042C-2F7A-4640-AE6C-B729AADAEA0E","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"af591b069328574f655af340d4c8ef703f6af3a9","datavalue":{"value":{"entity-type":"item","numeric-id":34175,"id":"Q34175"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$91E0A106-3B71-4766-81A9-B63F6EBC4830","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"c95b8a20ff7e0ae411f0d5085f4f70550483a403","datavalue":{"value":{"entity-type":"item","numeric-id":7369517,"id":"Q7369517"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$3FB3059B-46D2-4725-B656-595777D0895A","rank":"normal"}],"P223":[{"mainsnak":{"snaktype":"value","property":"P223","hash":"abcbe0b46a6904ccc6d3f61abb2cbf674a914685","datavalue":{"value":{"entity-type":"item","numeric-id":143877,"id":"Q143877"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$18AB864C-9F07-46EB-AB5A-7F7B96E186EB","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"0628c28d921d09a9f97b6e7755609b73c740b648","datavalue":{"value":{"entity-type":"item","numeric-id":143879,"id":"Q143879"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$074DE6AF-3D25-42AE-9DDD-9B08D156B955","rank":"normal"}],"P229":[{"mainsnak":{"snaktype":"value","property":"P229","hash":"bcc4d0095913594391c81b5d607cc7f066363baf","datavalue":{"value":"ssizeRNA","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q27844$90866921-DE3D-416D-9C69-F2336AAC3008","rank":"normal"}],"P114":[{"mainsnak":{"snaktype":"value","property":"P114","hash":"251fd109c2cd8c1ee39b48cd109c9f4b1c9fcf5c","datavalue":{"value":{"entity-type":"item","numeric-id":13519,"id":"Q13519"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$FF8A76D4-4418-47D1-82E4-7B63EF748D4F","rank":"normal"}],"P1460":[{"mainsnak":{"snaktype":"value","property":"P1460","hash":"908c3454b3659c4b140ccce33c5aee31081edc8d","datavalue":{"value":{"entity-type":"item","numeric-id":5976450,"id":"Q5976450"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$1F366873-E0A1-44C8-8678-7A945593923A","rank":"normal"}],"P339":[{"mainsnak":{"snaktype":"value","property":"P339","hash":"b5373c7748f9f242eac5063adcf182f66c27b2f4","datavalue":{"value":"https://github.com/cran/ssizeRNA","type":"string"},"datatype":"url"},"type":"statement","id":"Q27844$A8893979-E096-474E-9E47-F34013464D52","rank":"normal"}],"P1454":[{"mainsnak":{"snaktype":"value","property":"P1454","hash":"46ee145907050f1ae051c096fc15cf2aebbbd5f8","datavalue":{"value":"swh:1:snp:aed6a44cf0468ba4dc3700e52b9c9472653eca50","type":"string"},"datatype":"external-id"},"type":"statement","qualifiers":{"P339":[{"snaktype":"value","property":"P339","hash":"b5373c7748f9f242eac5063adcf182f66c27b2f4","datavalue":{"value":"https://github.com/cran/ssizeRNA","type":"string"},"datatype":"url"}],"P140":[{"snaktype":"value","property":"P140","hash":"2d2e73cb641627e18923d9e976f8aa8584949d7b","datavalue":{"value":{"time":"+2021-01-09T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P339","P140"],"id":"Q27844$220B40A7-7504-4E43-92E8-3BD9DAC011AF","rank":"normal"}],"P29":[{"mainsnak":{"snaktype":"value","property":"P29","hash":"75a6eb83d3288828710789d12890e693a3908cb5","datavalue":{"value":"https://cran.r-project.org/web/packages/ssizeRNA/index.html","type":"string"},"datatype":"url"},"type":"statement","id":"Q27844$A3EAD55A-0883-41C5-A4D7-F435241C0F82","rank":"normal"}],"P226":[{"mainsnak":{"snaktype":"value","property":"P226","hash":"56359f9045fe5db9438daf1ab901fd6bd2edb7a4","datavalue":{"value":"62","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q27844$2FE73C3B-6291-4BA0-BCC0-C398E2D452B8","rank":"normal"}],"P1458":[{"mainsnak":{"snaktype":"value","property":"P1458","hash":"2111177adaa64e7123853486fc4bfe833fdd80a0","datavalue":{"value":{"entity-type":"item","numeric-id":23871,"id":"Q23871"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$762CD051-A268-4309-950A-EB403CCD6802","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P1458","hash":"87fb0efe93796d6f1c8030a2154cf4d7659fadf7","datavalue":{"value":{"entity-type":"item","numeric-id":39789,"id":"Q39789"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$7AD2CE35-16B1-4170-A8F1-A7A1499EEE0E","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P1458","hash":"98198d058d553f9323aca12f67c5e28d62931571","datavalue":{"value":{"entity-type":"item","numeric-id":46039,"id":"Q46039"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$E6DFA543-9FB4-40C1-99DB-2DB05CA87781","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P1458","hash":"5bd19e268935d92a2960756142aefcba598eee0b","datavalue":{"value":{"entity-type":"item","numeric-id":56034,"id":"Q56034"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$02C6A27A-3362-4DBE-9DB8-A5740B58CD20","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P1458","hash":"6e80a16b2248b57f054898fe714df4ed992e9701","datavalue":{"value":{"entity-type":"item","numeric-id":1334351,"id":"Q1334351"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$7F86899B-9509-43C2-8B7E-1A736D7C5083","rank":"normal"}],"P43":[{"mainsnak":{"snaktype":"value","property":"P43","hash":"28e4b52bd7e987f8c9b988ef01e9f5f3d182177a","datavalue":{"value":"Peng Liu","type":"string"},"datatype":"string"},"type":"statement","id":"Q27844$E7F4011A-F922-4D40-8BE4-C0EDB50455E0","rank":"normal"}],"P170":[{"mainsnak":{"snaktype":"value","property":"P170","hash":"52a0dddddbf31cda4d021440bb3ef54deef16513","datavalue":{"value":{"time":"+2025-04-08T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"},"type":"statement","id":"Q27844$7D571391-C799-443E-BFFB-C166C2825FC7","rank":"normal"}],"P342":[{"mainsnak":{"snaktype":"value","property":"P342","hash":"a0beaece152e3d4cfe5f01b8a4c02caff7e1e6cc","datavalue":{"value":{"entity-type":"item","numeric-id":56774,"id":"Q56774"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","qualifiers":{"P132":[{"snaktype":"value","property":"P132","hash":"ec744ec39c5f0898254754afa40b51d54f1b1408","datavalue":{"value":"\u2265 3.2.3","type":"string"},"datatype":"string"}]},"qualifiers-order":["P132"],"id":"Q27844$46AAE2C5-0177-432D-A134-49452E0B9AAC","rank":"normal"}],"P1459":[{"mainsnak":{"snaktype":"value","property":"P1459","hash":"bc482f89b301489fb946e75f98e92ed16019ee03","datavalue":{"value":"We propose a procedure for sample size calculation while    controlling false discovery rate for RNA-seq experimental design. Our    procedure depends on the Voom method proposed for RNA-seq data analysis    by Law et al. (2014) <doi:10.1186/gb-2014-15-2-r29> and the sample size     calculation method proposed for microarray experiments by Liu and Hwang     (2007) <doi:10.1093/bioinformatics/btl664>. We develop a set of functions    that calculates appropriate sample sizes for two-sample t-test for RNA-seq    experiments with fixed or varied set of parameters. The outputs also contain a    plot of power versus sample size, a table of power at different sample sizes,    and a table of critical test values at different sample sizes.     To install this package, please use     'source(\"http://bioconductor.org/biocLite.R\"); biocLite(\"ssizeRNA\")'.     For R version 3.5 or greater, please use      'if(!requireNamespace(\"BiocManager\", quietly = TRUE)){install.packages(\"BiocManager\")}; BiocManager::install(\"ssizeRNA\")'.","type":"string"},"datatype":"string"},"type":"statement","id":"Q27844$10F5F2FE-D68D-4F9F-9F32-FC401B30B928","rank":"normal"}],"P37":[{"mainsnak":{"snaktype":"value","property":"P37","hash":"0b1f85d071ccb4e50a34f512629699b5905e35fa","datavalue":{"value":{"entity-type":"item","numeric-id":5974426,"id":"Q5974426"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q27844$2E3652D8-A70F-4CC9-9941-208509EDDC15","rank":"normal"}]},"sitelinks":{"mardi":{"site":"mardi","title":"SsizeRNA","badges":[],"url":"https://portal.mardi4nfdi.de/wiki/SsizeRNA"}}}}}