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Ferri} et al., Aequationes Math. 31, 121--141 (1986; Zbl 0623.57012)] and [\\textit{P. Bandieri} et al., Atti Semin. Mat. Fis. Univ. Modena Reggio Emilia 58, 11--45 (2011; Zbl 1263.57018)], or the book [\\textit{S. Lins}, Gems, computers and attractors for 3-manifolds. Singapore: World Scientific (1995; Zbl 0868.57002)].  The present paper introduces, in the 3-dimensional setting, a representation by regular 4-colored graphs for all compact 3-manifolds without spherical boundary components. The construction generalizes the previous one and it is strictly related to (generalized) Heegaard splittings.  The authors prove a lot of results, mainly concerning fundamental groups, combinatorial moves ``translating'' homeomorphism, connected sums and complexity.  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