{"entities":{"Q5983753":{"pageid":12576181,"ns":120,"title":"Item:Q5983753","lastrevid":56959809,"modified":"2026-03-24T23:00:53Z","type":"item","id":"Q5983753","labels":{"en":{"language":"en","value":"protHMM"}},"descriptions":{"en":{"language":"en","value":"Protein Feature Extraction from Profile Hidden Markov Models"}},"aliases":{},"claims":{"P31":[{"mainsnak":{"snaktype":"value","property":"P31","hash":"438d0eef0223375d3a92def8ffc6a10a8bf1ca95","datavalue":{"value":{"entity-type":"item","numeric-id":57080,"id":"Q57080"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$77003C75-8230-412F-B531-291EB19D683B","rank":"normal"}],"P1459":[{"mainsnak":{"snaktype":"value","property":"P1459","hash":"0cc798dc49999cf26d5ec9168ae91b46804fec83","datavalue":{"value":"Calculates a comprehensive list of features from profile hidden Markov models (HMMs) of proteins.     Adapts and ports features for use with HMMs instead of Position Specific Scoring Matrices, in order to take     advantage of more accurate multiple sequence alignment by programs such as 'HHBlits' Remmert et al. (2012)     <doi:10.1038/nmeth.1818> and 'HMMer' Eddy (2011) <doi:10.1371/journal.pcbi.1002195>. Features calculated by     this package can be used for protein fold classification, protein structural class prediction,     sub-cellular localization and protein-protein interaction, among other tasks. Some examples of features     extracted are found in Song et al. (2018) <doi:10.3390/app8010089>, Jin & Zhu (2021) <doi:10.1155/2021/8629776>,     Lyons et al. (2015) <doi:10.1109/tnb.2015.2457906> and Saini et al. (2015) <doi:10.1016/j.jtbi.2015.05.030>.","type":"string"},"datatype":"string"},"type":"statement","id":"Q5983753$8CA9CC87-71AE-4068-BEF5-3B9E46E7E2D6","rank":"normal"}],"P170":[{"mainsnak":{"snaktype":"value","property":"P170","hash":"08cc0177565652b477284f460fb67076118770bb","datavalue":{"value":{"time":"+2023-07-05T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"},"type":"statement","id":"Q5983753$42141B49-967A-4B19-A533-C5184F5D5507","rank":"normal"}],"P132":[{"mainsnak":{"snaktype":"value","property":"P132","hash":"dd764dabaf036ec40584882b7f9127cdfd73d125","datavalue":{"value":"0.1.1","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"f110ffc5363b0e547aee319401d7aadf244747e7","datavalue":{"value":{"time":"+2023-07-05T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q5983753$5F199C12-CDEB-46AB-8D10-223FC97607EB","rank":"normal"}],"P16":[{"mainsnak":{"snaktype":"value","property":"P16","hash":"0f3eb671edb425e348253cebdeb6288a0f22ddfe","datavalue":{"value":{"entity-type":"item","numeric-id":5983746,"id":"Q5983746"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$C5F53A15-AB04-4E82-839C-C49C7AA60E27","rank":"normal"}],"P19":[{"mainsnak":{"snaktype":"value","property":"P19","hash":"26d1eaa48d97b83920952ad991033456618bbb36","datavalue":{"value":{"entity-type":"item","numeric-id":5983746,"id":"Q5983746"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$CED2B284-48EA-4403-8FAC-CB40B63C14F1","rank":"normal"}],"P163":[{"mainsnak":{"snaktype":"value","property":"P163","hash":"64cd73e553e7920a9cd11e3377fb75fd0effb226","datavalue":{"value":{"entity-type":"item","numeric-id":56634,"id":"Q56634"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","qualifiers":{"P232":[{"snaktype":"value","property":"P232","hash":"08cd46e5d0670b30202d0ab659ba1ea1aef83363","datavalue":{"value":{"text":"\u2265 3","language":"en"},"type":"monolingualtext"},"datatype":"monolingualtext"}]},"qualifiers-order":["P232"],"id":"Q5983753$DBCE8D51-6974-4AD6-AA4A-C13C13DCF18E","rank":"normal"}],"P585":[{"mainsnak":{"snaktype":"value","property":"P585","hash":"bb75a9f02124bf9ee33e226caa7deae8d2d0caf2","datavalue":{"value":{"entity-type":"item","numeric-id":42038,"id":"Q42038"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$454C7081-B18A-4FB6-A13C-A09C3F05C77E","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"7aac00570a74583c448c8c2a1fe16ed9aaeff406","datavalue":{"value":{"entity-type":"item","numeric-id":57179,"id":"Q57179"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$073F9AE9-9658-4A9C-9AF7-68F3B384CF42","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"24c3e3d95d6aceb19323da214a060d1bb0535ab2","datavalue":{"value":{"entity-type":"item","numeric-id":57178,"id":"Q57178"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$FBB38F45-E4BD-471B-B437-2090241082C4","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"df7ce9b943378fde313268c3d8f6d1566d1fe7c2","datavalue":{"value":{"entity-type":"item","numeric-id":85585,"id":"Q85585"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$D509615A-B98D-4E6C-9B1F-A2A91AF4942D","rank":"normal"}],"P223":[{"mainsnak":{"snaktype":"value","property":"P223","hash":"d3acaf218a01fdb58d6d2a5cd9daa6ca01332e46","datavalue":{"value":{"entity-type":"item","numeric-id":5983747,"id":"Q5983747"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$ADBF5EB1-F3EB-4DEA-BB22-B7B23B1A5F45","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"93ea785a017e7f69f1103aa3189e8dec01a31a94","datavalue":{"value":{"entity-type":"item","numeric-id":5983748,"id":"Q5983748"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$2977794E-CBB2-43A8-9CC3-1B8930F4C439","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"48d04810a09f1a1e50beed4dcd7094f024863e26","datavalue":{"value":{"entity-type":"item","numeric-id":5983749,"id":"Q5983749"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$BC452398-4A12-42F2-BCD4-398C446196FB","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"3f538c33e2678e2582234b742face37ca480004d","datavalue":{"value":{"entity-type":"item","numeric-id":5983750,"id":"Q5983750"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$828E4BB9-D265-4800-B66E-C7D854B3111E","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"061c7b68e486b7917c4908bdd8d0206bf84b610b","datavalue":{"value":{"entity-type":"item","numeric-id":5983751,"id":"Q5983751"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$48FEDA1E-D2CE-458B-BC1F-EDC926E49C77","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"d7d3e16fe14bb9dbe56ab65090b7edc9c7acff54","datavalue":{"value":{"entity-type":"item","numeric-id":5983752,"id":"Q5983752"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$49DFED04-07B6-4FF0-9FE0-F1A30DF0EE7C","rank":"normal"}],"P229":[{"mainsnak":{"snaktype":"value","property":"P229","hash":"ce241d3607d646597fd6070308fee56068cdc9ed","datavalue":{"value":"protHMM","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q5983753$9355FD14-F0A3-4559-B528-27FBA291D7C6","rank":"normal"}],"P1460":[{"mainsnak":{"snaktype":"value","property":"P1460","hash":"908c3454b3659c4b140ccce33c5aee31081edc8d","datavalue":{"value":{"entity-type":"item","numeric-id":5976450,"id":"Q5976450"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$E05C7481-279F-44C1-8C47-893AE42ED25A","rank":"normal"}],"P114":[{"mainsnak":{"snaktype":"value","property":"P114","hash":"251fd109c2cd8c1ee39b48cd109c9f4b1c9fcf5c","datavalue":{"value":{"entity-type":"item","numeric-id":13519,"id":"Q13519"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q5983753$7BDA2730-0083-4FB0-BAD3-DC4C912725B8","rank":"normal"}]},"sitelinks":{"mardi":{"site":"mardi","title":"ProtHMM","badges":[],"url":"https://portal.mardi4nfdi.de/wiki/ProtHMM"}}}}}