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Given a reflexive polytope \\(\\Delta\\), a pencil of Calabi-Yau varieties called the vertex pencil is defined. Two combinatorially equivalent polytopes are said to be a kernel pair if the matrices given by their vertices have the same kernel. A pair of polytopes which are both polar dual and a kernel pair is called a mirror kernel pair.  The first lemma is that vertex pencils corresponding to a kernel pair of polytopes have the same Hasse-Witt matrices, and as a corollary, they have the same number of rational points modulo \\(p\\) (prime).  The main theorem is to obtain mirror kernel pairs of three-dimensional reflexive polytopes.  Theorem: There are \\(32\\) mirror kernel piars of three-dimensional reflextive polytopes, of which \\(6\\) are self-dual. The mirror kernel pairs are divided into \\(16\\) types with a common kernel; each type is associated to vertex pencils with common Picard-Fuchs equations. Four of these types correspond to vertex pencils of \\(K3\\) surfaces with general Picard number \\(19\\) over \\(\\mathbf{C}\\). If \\(\\Delta\\) is a reflextive polytope of one of these four types, the Hasse-Witt invariant is a trancated hypergeometric series \\(_3F_2\\) modulo \\(p\\). 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