{"entities":{"Q6675827":{"pageid":14395158,"ns":120,"title":"Item:Q6675827","lastrevid":54752147,"modified":"2026-01-29T20:32:13Z","type":"item","id":"Q6675827","labels":{"en":{"language":"en","value":"Combined high-depth Illumina+PacBio Sequencing of several samples from FDA-ARGOS"}},"descriptions":{"en":{"language":"en","value":"Dataset published at Zenodo repository."}},"aliases":{},"claims":{"P31":[{"mainsnak":{"snaktype":"value","property":"P31","hash":"dae155fd0809a7906855cd4fa50dd7d71bed552b","datavalue":{"value":{"entity-type":"item","numeric-id":56885,"id":"Q56885"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6675827$7DFDCF5A-94F0-441A-9CC5-6FAB23A55A69","rank":"normal"}],"P1459":[{"mainsnak":{"snaktype":"value","property":"P1459","hash":"475b6a320493cedf3716df4e46c3e3620a4e4da5","datavalue":{"value":"The (real) sequencing data is compiled from a concatenation of sequencing runs from Database for Reference Grade Microbial Sequences (FDA-ARGOS). Specifically, the following samples were sequenced with both Illumina and PacBio. The sample accessions are shown below.     BioSample    Run        Platform    Organism                                         bases source                                       chr        chr      chr       chr                                            dbl chr                                      1 SAMN06173354 SRR5409204 ILLUMINA    Bacillus anthracis                          1778000000 Colorado Serum Co., Anthrax Spore Vaccine  2 SAMN06173354 SRR5409205 PACBIO_SMRT Bacillus anthracis                          2420000000 Colorado Serum Co., Anthrax Spore Vaccine  3 SAMN06173356 SRR5448657 ILLUMINA    Bacillus circulans                          2311000000 swab with brown-gray powder                4 SAMN06173356 SRR5448656 PACBIO_SMRT Bacillus circulans                           242000000 swab with brown-gray powder                5 SAMN04875535 SRR4123920 ILLUMINA    Elizabethkingia anophelis                   1357000000 blood                                      6 SAMN04875535 SRR4123919 PACBIO_SMRT Elizabethkingia anophelis                   2173000000 blood                                      7 SAMN06173306 SRR5413253 ILLUMINA    Escherichia coli O157                       3051000000 clinical isolate                           8 SAMN06173306 SRR5413252 PACBIO_SMRT Escherichia coli O157                        915000000 clinical isolate                           9 SAMN06173318 SRR5413272 ILLUMINA    Mycobacterium avium subsp. paratuberculosis 1032000000 feces                                     10 SAMN06173318 SRR5413271 PACBIO_SMRT Mycobacterium avium subsp. paratuberculosis  462000000 feces                                     11 SAMN07312468 SRR5879398 ILLUMINA    Mycobacterium tuberculosis                  1054000000 human                                     12 SAMN07312468 SRR5879396 PACBIO_SMRT Mycobacterium tuberculosis                  1854000000 human                                     13 SAMN04875542 SRR4123931 ILLUMINA    Neisseria gonorrhoeae                       1053000000 ATCC strain                               14 SAMN04875542 SRR4123930 PACBIO_SMRT Neisseria gonorrhoeae                       1117000000 ATCC strain      Samples were selected with the SRA Run selector. The SraRunTable.txt file was exported containing the metadata for each sample, and fastq-dump from the SRA toolkit was used to write out fastq files for each run, with paired Illumina data being split into separate _1.fastq.gz and _2.fastq.gz files.","type":"string"},"datatype":"string"},"type":"statement","id":"Q6675827$CC680122-D19D-4305-AA82-F82F73F27D8C","rank":"normal"}],"P28":[{"mainsnak":{"snaktype":"value","property":"P28","hash":"595170a4b875a61e7a2746d3d821c86b24ad02ad","datavalue":{"value":{"time":"+2018-07-18T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"},"type":"statement","id":"Q6675827$140E0152-667A-4F1B-A023-928DAFD90E12","rank":"normal"}],"P16":[{"mainsnak":{"snaktype":"value","property":"P16","hash":"16910dba8af0ca3e949d067450792293af819c1b","datavalue":{"value":{"entity-type":"item","numeric-id":63823,"id":"Q63823"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6675827$66FEC60D-7ADE-41DD-B602-43557FF31073","rank":"normal"}],"P227":[{"mainsnak":{"snaktype":"value","property":"P227","hash":"83815914c2b798b3dfaa5116dd2caf0b7e7d07c5","datavalue":{"value":"1314292","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q6675827$67062B2A-63F8-4B9C-BF9D-4F92E94956D9","rank":"normal"}],"P27":[{"mainsnak":{"snaktype":"value","property":"P27","hash":"6895fbcae5f895bd7728e209c20846e68dee921a","datavalue":{"value":"10.5281/zenodo.1314292","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q6675827$1739F385-666C-4EFC-BFBE-7B85A78BED2E","rank":"normal"}],"P163":[{"mainsnak":{"snaktype":"value","property":"P163","hash":"e68c451775d8e2699e023b1b9b74a9d21a410b77","datavalue":{"value":{"entity-type":"item","numeric-id":57038,"id":"Q57038"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6675827$687BF71C-931E-4383-9F87-4FE9A0CB0613","rank":"normal"}],"P1460":[{"mainsnak":{"snaktype":"value","property":"P1460","hash":"d1e8073b72a070520efd3d14d4b3d2d3d03859e2","datavalue":{"value":{"entity-type":"item","numeric-id":5984635,"id":"Q5984635"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6675827$F345031A-A291-462E-B681-AE0DEEB2CCC1","rank":"normal"}]},"sitelinks":{"mardi":{"site":"mardi","title":"Combined high-depth Illumina+PacBio Sequencing of several samples from FDA-ARGOS","badges":[]}}}}}