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Tree sequences can be decompressed as follows:  $ tsunzip sgdp_chr1.trees.tsz  Once decompressed, trees files can be loaded and processed usingtskit.  import tskit ts = tskit.load(\"sgdp_chr1.trees\") # ts is an instance of tskit.TreeSequence  print(\"Chromosome 1 contains {} trees\".format(ts.num_trees))  Metadata associated with individuals and populations was derived from the originalsourceand converted to JSON form. For example, to access individual metadata we can use:  import tskit import json ts = tskit.load(\"sgdp_chr1.trees\") ind = ts.individual(0) metadata_dict = json.loads(ind.metadata)  The metadata_dict variable will now containall the metadata for the individual with ID 0 as a dictionary. Metadata associated with populations can be found in a similar way. Population IDs are associated with individuals via their constituent nodes. For example,  pop_metadata = [json.loads(pop.metadata) for pop in ts.populations()] ind_node = ts.node(ind.nodes[0]) ind_pop_metadata = pop_metadata[ind_node.population]  After this, theind_pop_metadata variable will contain the population level metadata for individual ID 0.  The full data pipeline used to generate these tree sequences and associated metadata is available on GitHub.","type":"string"},"datatype":"string"},"type":"statement","id":"Q6682871$1EA12231-564A-443A-9256-80AB55EBBF7F","rank":"normal"}],"P28":[{"mainsnak":{"snaktype":"value","property":"P28","hash":"76aea2b75495bec6f97e62ffc31f2b341286902a","datavalue":{"value":{"time":"+2019-05-20T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"},"type":"statement","id":"Q6682871$EED31EE0-850A-435B-A956-460BE60076AC","rank":"normal"}],"P16":[{"mainsnak":{"snaktype":"value","property":"P16","hash":"e539c5a80e437d703b47434ae23d190dc78a9f80","datavalue":{"value":{"entity-type":"item","numeric-id":71126,"id":"Q71126"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$6B455F42-3FD4-4E8C-A3EA-4CC4C5757166","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P16","hash":"0d0d77a0d03c71fd7546038d410d07175a3c9da7","datavalue":{"value":{"entity-type":"item","numeric-id":71110,"id":"Q71110"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$4BAA0FA2-0600-4DF6-8571-F45E9EABBA8C","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P16","hash":"489b83bf3de57674053ff206397ac94bad7317fc","datavalue":{"value":{"entity-type":"item","numeric-id":71108,"id":"Q71108"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$4A6AE514-E3BD-42E0-9B96-59F9D44B397C","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P16","hash":"0b3fd7fe439e5adc0bb579992e983ec2f489b580","datavalue":{"value":{"entity-type":"item","numeric-id":71129,"id":"Q71129"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$7B30CCCB-6560-49AE-BA62-36A4F4AF2095","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P16","hash":"361299da028ad634d8bb422589fa872e5a615fa2","datavalue":{"value":{"entity-type":"item","numeric-id":71130,"id":"Q71130"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$E558BD34-3D6A-4AD0-94BC-0B57FD6ECDC0","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P16","hash":"17eb43105a66bae6b9079b0ef4a6e45e5af45645","datavalue":{"value":{"entity-type":"item","numeric-id":2962076,"id":"Q2962076"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$0F86AF59-11B3-4D67-B3FB-B2BD8B624D7E","rank":"normal"}],"P227":[{"mainsnak":{"snaktype":"value","property":"P227","hash":"7463fc8e876796eb8fa7847ab792f21b576b8080","datavalue":{"value":"3052359","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q6682871$75DE398B-B060-4759-8F51-4BAD2C162602","rank":"normal"}],"P27":[{"mainsnak":{"snaktype":"value","property":"P27","hash":"fe033997e27c667e5974fca148937b6a9db43a75","datavalue":{"value":"10.5281/zenodo.3052359","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q6682871$2AB26353-306D-43E0-B391-48710C2B276F","rank":"normal"}],"P163":[{"mainsnak":{"snaktype":"value","property":"P163","hash":"45fcd4163b5f33e6e8c784f5522d7246c0a1a61e","datavalue":{"value":{"entity-type":"item","numeric-id":57056,"id":"Q57056"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$A6D8CBF0-CC5A-4C0C-9774-BDC1D6CFCDB0","rank":"normal"}],"P1474":[{"mainsnak":{"snaktype":"value","property":"P1474","hash":"9828656774b0531597a635a46438869928ecc18d","datavalue":{"value":"1.0.0","type":"string"},"datatype":"string"},"type":"statement","id":"Q6682871$32777884-566B-4E98-B8B0-47AE6EB33CDC","rank":"normal"}],"P1460":[{"mainsnak":{"snaktype":"value","property":"P1460","hash":"d1e8073b72a070520efd3d14d4b3d2d3d03859e2","datavalue":{"value":{"entity-type":"item","numeric-id":5984635,"id":"Q5984635"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6682871$8E2F7C4B-FB23-431D-A7A7-2F910B0A3616","rank":"normal"}]},"sitelinks":{"mardi":{"site":"mardi","title":"Inferring whole-genome histories in large population datasets: inferred tree sequences for Simons Genome Diversity Project","badges":[],"url":"https://portal.mardi4nfdi.de/wiki/Inferring_whole-genome_histories_in_large_population_datasets:_inferred_tree_sequences_for_Simons_Genome_Diversity_Project"}}}}}