{"entities":{"Q6689840":{"pageid":14408865,"ns":120,"title":"Item:Q6689840","lastrevid":54739817,"modified":"2026-01-29T20:25:32Z","type":"item","id":"Q6689840","labels":{"en":{"language":"en","value":"Global bare soil, photosynthetic and non-photosynthetic vegetation fraction annual at 500 m resolution"}},"descriptions":{"en":{"language":"en","value":"Dataset published at Zenodo repository."}},"aliases":{},"claims":{"P31":[{"mainsnak":{"snaktype":"value","property":"P31","hash":"dae155fd0809a7906855cd4fa50dd7d71bed552b","datavalue":{"value":{"entity-type":"item","numeric-id":56885,"id":"Q56885"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6689840$4351262C-3D8F-458A-BC9E-CF3D4A08D6D1","rank":"normal"}],"P1459":[{"mainsnak":{"snaktype":"value","property":"P1459","hash":"8b74ccddebe2c4718054134b93943bddb2c3ee3a","datavalue":{"value":"Annual mean and std for (1) bare soil fraction, and (2) photosynthetic and (3) non-photosynthetic vegetation annual at 500 m resolution for 20012023. The dataset was obtained from:https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html (monthly values; 320GB in total). Mean and std was derived using terra package in R using functions \"mean\" and \"std\" from 12 monthly values; missing values were ignored during derivation. Note: the Global Vegetation Fractional Cover Product (GVFCP) v3.1 (Hilland Guerschman, 2022) is derived from spectral unmixing of all seven optical bands from the 500 m MODIS (Moderate Resolution Imaging Spectroradiometer) Nadir BRDF (Bidirectional Reflectance Distribution Function)-adjusted Reflectance Product (NBAR, MCD43A4 Collection 6). A similar dataset has been produced by Sun et al., (2024), covering period 20012022. Below is the sample code explaining how were the mean, max and std derived. ## Download from: https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html ## wget -e robots=off -nH --cut-dirs 4 -nc -r -l5 -A '*.nc' -R 'catalog*' -I /thredds/fileServer/,/thredds/catalog/ 'https://thredds.nci.org.au/thredds/catalog/tc43/modis-fc/v310/tiles/monthly/cover/catalog.html' ## 6857 tiles library(terra) modis.tiles = list.files(\"/mnt/lacus/raw/modis-fc/v310/tiles/monthly/cover/\", pattern = glob2rx(\"*.nc\")) mod.lst = unique(sapply(modis.tiles, function(i){strsplit(i, \"\\\\.\")[[1]][4]})) str(mod.lst) ## 272  ## aggregate per year per tile nc_tile - function(i, year, dir.x=\"/mnt/lacus/raw/modis-fc/v310/tiles/monthly/cover/\", mc.cores=parallel::detectCores()){    require(terra)    if(year == 2023 | year == 2024){       in.filename = paste0(dir.x, \"FC_Monthly_Medoid.v310.MCD43A4.\", i, \".\", year, \".061.nc\")    } else {       in.filename = paste0(dir.x, \"FC_Monthly_Medoid.v310.MCD43A4.\", i, \".\", year, \".006.nc\")    }    bs.filenames = paste0(\"./modis-fc/bs_\", c(\"mean\", \"max\", \"std\"), \"/FC_Monthly_Medoid.v310.MCD43A4.\", i, \".\", year, \".006.tif\")    dg = terra::rast(in.filename)    if(any(!file.exists(bs.filenames))){       bs = dg[\"bare_soil\"] ## 12 months       dg.m = app(bs, fun=mean, na.rm=TRUE,                   filename=bs.filenames[1],                   wopt=list(gdal=c(\"COMPRESS=DEFLATE\"), datatype='INT1S'),                   overwrite=TRUE, cores = mc.cores)       dg.x = app(bs, fun=max, na.rm=TRUE,                   filename=bs.filenames[2],                   wopt=list(gdal=c(\"COMPRESS=DEFLATE\"), datatype='INT1S'),                   overwrite=TRUE, cores = mc.cores)       dg.s = app(bs, fun=sd, na.rm=TRUE,                   filename=bs.filenames[3],                   wopt=list(gdal=c(\"COMPRESS=DEFLATE\"), datatype='INT1S'),                   overwrite=TRUE, cores = mc.cores)    } } ## run in parallel for(year in 2001:2024){    x = parallel::mclapply(sample(mod.lst), function(i){try( nc_tile(i, year=year, mc.cores = 2) )}, mc.cores = 40)    tmpFiles(remove=TRUE) }","type":"string"},"datatype":"string"},"type":"statement","id":"Q6689840$1BFD65A3-7270-4DCD-9D73-D431B77CD528","rank":"normal"}],"P28":[{"mainsnak":{"snaktype":"value","property":"P28","hash":"42abfce89b1423fa7cf41a79fedc46406f32c813","datavalue":{"value":{"time":"+2024-06-18T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"},"type":"statement","id":"Q6689840$A7B1A267-0C5D-420A-B948-0865E441D838","rank":"normal"}],"P16":[{"mainsnak":{"snaktype":"value","property":"P16","hash":"a616ba19795a79cfda5fa8023f9880b73a29f04d","datavalue":{"value":{"entity-type":"item","numeric-id":73861,"id":"Q73861"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6689840$254C1854-8659-4869-84A7-65E9EC7001AB","rank":"normal"}],"P227":[{"mainsnak":{"snaktype":"value","property":"P227","hash":"008b061f5b74c8ee0a85570e6f2b7769a600ee8e","datavalue":{"value":"12071317","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q6689840$70CC52B8-EF85-40F4-8411-89D635206DFA","rank":"normal"}],"P27":[{"mainsnak":{"snaktype":"value","property":"P27","hash":"0b42e1fe6696cc2ee9d2a6a64b731f728a019ce3","datavalue":{"value":"10.5281/zenodo.12071317","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q6689840$E39A2BFB-CECC-4DC3-BEB5-54CA9FB7F549","rank":"normal"}],"P163":[{"mainsnak":{"snaktype":"value","property":"P163","hash":"e68c451775d8e2699e023b1b9b74a9d21a410b77","datavalue":{"value":{"entity-type":"item","numeric-id":57038,"id":"Q57038"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6689840$6715FD7E-4B34-433A-9016-419FE857B9DD","rank":"normal"}],"P1460":[{"mainsnak":{"snaktype":"value","property":"P1460","hash":"d1e8073b72a070520efd3d14d4b3d2d3d03859e2","datavalue":{"value":{"entity-type":"item","numeric-id":5984635,"id":"Q5984635"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q6689840$105402D5-3A46-482E-B4D6-314E3DAE98F8","rank":"normal"}]},"sitelinks":{"mardi":{"site":"mardi","title":"Global bare soil, photosynthetic and non-photosynthetic vegetation fraction annual at 500 m resolution","badges":[],"url":"https://portal.mardi4nfdi.de/wiki/Global_bare_soil,_photosynthetic_and_non-photosynthetic_vegetation_fraction_annual_at_500_m_resolution"}}}}}