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In recent years, it has been noticed that if $\\Delta$ is of type ADE, then the $G$-Hitchin system is related to certain quasi-projective Calabi-Yau threefolds. For example, \\textit{D. E. Diaconescu} et al. [Math. Res. Lett. 14, No. 5--6, 745--756 (2007; Zbl 1135.32300)] constructed a family $\\pi: \\mathcal{X}\\rightarrow B(\\Sigma, \\Delta)$ of quasi-projective Gorenstein Calabi-Yau threefolds over the Hitchin base $B(\\Sigma, \\Delta)$ such that the intermediate Jacobian of $X_b=\\pi^{-1}(b)$, \\[ J^2(X_b)=H^3(X_b,\\mathbb{C})/(F^2H^3(X_b,\\mathbb{C})+H^3(X_b,\\mathbb{Z})), \\] is isomorphic to the Hitchin fibre $h^{-1}(b)$ for generic $b\\in B(\\Sigma, \\Delta)$. \\par This paper generalizes this result to the cases of all simple complex Lie groups of any Dynkin type. \\par Firstly, for any irreducible Dynkin diagram $\\Delta$ of type $B_k$, $C_k$, $F_4$, or $G_2$, the author constructs a family of Calabi-Yau orbifolds (stacks) $[\\mathcal{X}/\\mathcal{C}]\\rightarrow B(\\Sigma, \\Delta)$ over the Hitchin base $B(\\Sigma, \\Delta)$, which is the fibre-preserving global quotient of a family $ \\mathcal{X}\\rightarrow B(\\Sigma, \\Delta)$ of quasi-projective Gorenstein Calabi-Yau threefolds by a finite group $\\mathcal{C}$. Here $\\mathcal{C}$ is a subgroup of the graph automorphisms $\\mathrm{Aut}(\\Delta_h)$ of an irreducible ADE-Dynkin diagram $\\Delta_h$, and $\\Delta$ is obtained from $\\Delta_h$ by folding, i.e. $\\Delta=\\Delta_h^{\\mathcal{C}}$. Furthermore, there is a Zariski open set $B^o\\subset B(\\Sigma, \\Delta)$ such that the restriction $\\mathcal{X}^o$ of $\\mathcal{X}$ on $B^o$ is smooth. Secondly, it is proved that the intermediate Jacobian $\\mathcal{J}^2([\\mathcal{X}^o/\\mathcal{C}])\\rightarrow B^o$ is isomorphic to the $G_{ad}(\\Delta)$-Hitchin system, where $G_{ad}(\\Delta)$ is the simple adjoint complex Lie group with Dynkin diagram $\\Delta$. The intermediate Jacobians are defined by using the integral equivariant cohomology $H_{\\mathcal{C}}^3(X_b, \\mathbb{Z})$ with respect to the $\\mathcal{C}$-action of the fibre $X_b$. Finally, by working with equivariant compact support cohomology, the author obtains the Langlands dual version of the above result, and thus covers all simple simply connected complex Lie 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