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Description TMVisDB is a comprehensive SQLite database containing annotations for over 46 million predicted transmembrane proteins. The database combines AlphaFold DB structure predictions with transmembrane topology predictions from the protein language model (pLM) based method TMbed. This release contains the core database structure and annotations, with sequence information and database indices removed due to size constraints. The full database with sequences and indices is available through the web interface at https://tmvisdb.rostlab.org. Database Contents:      TMbed prediction      Taxonomy (Domain)         Transmembrane type   Signal Peptide   All   Bacteria   Eukaryota   Archaea   Other     Alpha-helix (TMH)   no   39,391,449   28,020,596   9,944,469   991,477   434,907      yes   4,475,707   2,977,947   1,306,796   152,801   38,163     Beta-stranded barrels (TMB)   no   323,017   269,126   43,215   1,401   9,275      yes   1,814,523   1,786,881   7,959   1,608   18,075     Both   no   20,918   16,937   3,584   90   307      yes   22,836   21,731   771   52   282     Total   46,048,450   33,093,218   11,306,794   1,147,429   501,009      Schema The database consists of the following main tables:  organism: Contains taxonomic information sequence: Links proteins to their organisms and UniProt identifiers annotation: Stores transmembrane topology predictions tminfo: Contains transmembrane statistics and classifications  A diagram of the database scheme can be found here Note on Removed Data To make the database distribution feasible, we removed:  All sequence information from the sequence table All database indices (which can be recreated using the schema)  Users requiring sequence information should:  Reference the UniProt accessions provided in the database Access the full database through our web interface Or rebuild indices locally if needed using the schema provided in our GitHub repository  Associated Resources  Web Interface Source Code Database 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