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R. Bridson} and \\textit{D. T. Wise}, Math. Proc. Cambridge Philos. Soc. 126, No. 3, 481--497 (1999; Zbl 0934.20018); \\textit{D. T. Wise}, Invent. Math. 149, No. 3, 579--617 (2002; Zbl 1040.20024)]), one considers the notions of VH-clean, geometrically clean, and algebraically clean graphs of free groups, together with their virtual analogues. The paper studies the relations among these conditions.\\N\\NThe main result shows that there exists a geometrically clean graph of finite graphs whose fundamental group is not virtually compact special. This gives a negative answer to a question of Wise asking whether every geometrically clean graph of finite rank free groups is virtually compact special. As a consequence, the class of groups which virtually split as VH-clean graphs of finite rank free groups is properly contained in the class of groups which virtually split as geometrically clean graphs of finite rank free groups.\\N\\NThe construction is explicit: the author considers a graph of graphs over the theta-graph \\(\\Theta\\) whose fundamental group embeds as an index \\(6\\) subgroup of the Artin group \\(A_{2,3,\\infty}\\). 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