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If the curves \\(\\alpha\\) and \\(\\beta\\) are in minimal position and \\(S_g \\setminus (\\alpha \\cup \\beta)\\) is a disjoint union of topological discs, then it is called a filling pair. A filling pair \\((\\alpha, \\beta)\\) is called a separating filling pair if at least one of \\(\\alpha\\) or \\(\\beta\\) is a separating simple closed curve.\\N\\NIn this paper, the authors are concerned with the existence of minimally intersecting separating filling pairs. More precisely, the authors prove the following theorems.\\N\\N\\textbf{Theorem 1.} There exists a minimally intersecting separating filling pair on \\(S_g\\) if and only if \\(g\\) is even and \\(g \\geq 4\\).\\N\\N\\textbf{Theorem 2.} For genus \\(g \\geq 3\\) odd, there exists a separating filling pair on \\(S_g\\) with four complementary discs.\\N\\NMoreover, let \\(N(g)\\) be the number of \\(Mod(S_g)\\)-orbits of minimally intersecting separating filling pairs. Then, the authors show that \\N\\[\\N\\frac{\\prod_{k=1}^{(g-4)/2}(3k+5)}{4 \\times (2g)^2 \\times (\\frac{g-4}{2})!} \\leq N(g) \\leq 2(2g-2)(2g-2)!.\\N\\]\\NFurthermore, constructing a Morse function \\(\\mathcal{F}_g\\) on the moduli space \\(\\mathcal{M}_g\\), they also prove that the cardinality of the set of global minima of \\(\\mathcal{F}_g\\) is equal to the number of Mod\\((S_g)\\)-orbits of such filling 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