{"entities":{"Q90619":{"pageid":91907,"ns":120,"title":"Item:Q90619","lastrevid":105555383,"modified":"2026-10-10T10:01:11Z","type":"item","id":"Q90619","labels":{"en":{"language":"en","value":"polyRAD"}},"descriptions":{"en":{"language":"en","value":"Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids"}},"aliases":{},"claims":{"P31":[{"mainsnak":{"snaktype":"value","property":"P31","hash":"438d0eef0223375d3a92def8ffc6a10a8bf1ca95","datavalue":{"value":{"entity-type":"item","numeric-id":57080,"id":"Q57080"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$DCF52FA9-3A2F-486E-B5D8-5FB8AC31FC8F","rank":"normal"}],"P132":[{"mainsnak":{"snaktype":"value","property":"P132","hash":"64de38b91c68bda6392af8b219c611ddca07554c","datavalue":{"value":"2.0.0","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"491645a0caac8d7c63dd7bfb35ffb395e4be5a58","datavalue":{"value":{"time":"+2022-11-06T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$982330ED-9713-4A8A-B692-E19A2A35EAA2","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"b542975f358e64266fc8bf3287bc018a1e05a763","datavalue":{"value":"PACKAGES.rds","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"bdab782bc09c5c1d8687a0515dd3ffbe9dda94be","datavalue":{"value":{"time":"+2026-07-09T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$14D4F401-D358-4F03-A182-A9BACE725F28","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"39e3f7dc180034ff176655763cf1f5e0c7d0b226","datavalue":{"value":"0.5-0","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"a9aa22cb8a96ecb8781adebec8cb26e1601a98e8","datavalue":{"value":{"time":"+2018-08-02T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$481380B1-15ED-4D3C-B1CA-D6B8BF6A5DEA","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"52132506095ca5fb2946ebd8e612b254d9fd37af","datavalue":{"value":"1.0","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"dd5f23ee54392c85eac5a5d27f88a008ee6a7846","datavalue":{"value":{"time":"+2018-11-20T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$76D7E9D4-B5EB-4FB9-B50C-5DF4029A060C","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"fb978985647a38ef3b5cae50bb4a636b3b555590","datavalue":{"value":"1.1","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"1f9d744aba6e2deda220dd0d595121d9a4e53fb3","datavalue":{"value":{"time":"+2019-06-04T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$0D9AB7BA-3FF3-4799-AC91-E803EED9A0A6","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"862c2b6e415458c6b3b8084e8e249be0745ca1dd","datavalue":{"value":"1.2","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"f72dfbfeee19233bb4c813050d24c5c2edf4e963","datavalue":{"value":{"time":"+2020-05-12T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$DE0E877C-91F0-46A7-B793-45E2B0951B93","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"9225c6fe829656e2eb00ac854fa62c1b2ae4d637","datavalue":{"value":"1.3","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"fc4d6500ec144e990e4b1b485b87dc92bc3ddbea","datavalue":{"value":{"time":"+2021-01-06T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$54722C2F-E1A4-44CD-9804-5EF3CAA5F96D","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"b404af3e53f5a06fc62e909848e22983862e43d9","datavalue":{"value":"1.4","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"147faece4ae0992f4cfbbf83ccc35310fcf45b97","datavalue":{"value":{"time":"+2021-03-23T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$C204A322-ECC6-4E57-8D96-49D41AF1C54F","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"af01e46b0b8b821f8598e3d557ba764f2f2f6d23","datavalue":{"value":"1.5","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"f3659634a54505b21af2691a50b5a61bfaa047bf","datavalue":{"value":{"time":"+2021-09-03T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$CB6D74B0-1BE9-4C53-8235-A295F2BE7215","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"a1c31a8f1c3ff790f2b7224a452fcfc47eb67abe","datavalue":{"value":"1.6","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"ddc781c9898212b64a2f326cc4a8c82a7375daac","datavalue":{"value":{"time":"+2022-02-15T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$671BF66C-B545-4DF3-80A7-2A6B11FE2E3C","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P132","hash":"8e310132757e0e270e7e1bbf2930ecd7816dd938","datavalue":{"value":"2.0.1","type":"string"},"datatype":"string"},"type":"statement","qualifiers":{"P28":[{"snaktype":"value","property":"P28","hash":"af0048312c2c300e15e491b40891f550ce38e2d1","datavalue":{"value":{"time":"+2026-03-22T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"}]},"qualifiers-order":["P28"],"id":"Q90619$2D642A63-A0EF-4042-B2D8-7591E8531666","rank":"normal"}],"P16":[{"mainsnak":{"snaktype":"value","property":"P16","hash":"2516c2d1cda80e532eceb6ffd50cb454013308c9","datavalue":{"value":{"entity-type":"item","numeric-id":90612,"id":"Q90612"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$BAFC65E1-6A7D-4EBA-8C35-85E7F79B5595","rank":"normal"}],"P19":[{"mainsnak":{"snaktype":"value","property":"P19","hash":"dace9c3270bfc4f6f9b0c502146eefad3f42a9ec","datavalue":{"value":{"entity-type":"item","numeric-id":90612,"id":"Q90612"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$5B07A17C-5424-4228-B45A-DBCA487A332B","rank":"normal"}],"P163":[{"mainsnak":{"snaktype":"value","property":"P163","hash":"caec58e2e2e3256bca461f95da85075ecd3567cd","datavalue":{"value":{"entity-type":"item","numeric-id":56623,"id":"Q56623"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$0761C89F-7106-40CC-BA03-1AE9992EC3CB","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P163","hash":"8576d3d16efe97b9b62facebe80c3ed9e3b6aae2","datavalue":{"value":{"entity-type":"item","numeric-id":56621,"id":"Q56621"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","qualifiers":{"P232":[{"snaktype":"value","property":"P232","hash":"06f074efd5e7d7d06d7477e8ca68e18601234f9f","datavalue":{"value":{"text":"expanded from: GPL (\u2265 2)","language":"en"},"type":"monolingualtext"},"datatype":"monolingualtext"}]},"qualifiers-order":["P232"],"id":"Q90619$CD287378-3880-4400-AC40-34B79B6F24E5","rank":"normal"}],"P342":[{"mainsnak":{"snaktype":"value","property":"P342","hash":"6cbc80e2280919b8fb62581ce85d408be4c5aa56","datavalue":{"value":{"entity-type":"item","numeric-id":57177,"id":"Q57177"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$0EC07412-142E-4712-822B-654D40AB6C23","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P342","hash":"a0beaece152e3d4cfe5f01b8a4c02caff7e1e6cc","datavalue":{"value":{"entity-type":"item","numeric-id":56774,"id":"Q56774"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","qualifiers":{"P132":[{"snaktype":"value","property":"P132","hash":"d58e5b1027dfb6f2eb46f744a45ba1224fa0fc25","datavalue":{"value":"\u2265 3.5.0","type":"string"},"datatype":"string"}]},"qualifiers-order":["P132"],"id":"Q90619$EF16CE29-2AC6-4404-A001-822AA5877A0C","rank":"normal"}],"P585":[{"mainsnak":{"snaktype":"value","property":"P585","hash":"4aedd26c90700bc8a95718dd307de139d444de4b","datavalue":{"value":{"entity-type":"item","numeric-id":59337,"id":"Q59337"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$E96FF38F-7B48-4751-9E31-F72D9C5C5D02","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"50d9f1e786520ba1c7d2be9d413afed79db9709e","datavalue":{"value":{"entity-type":"item","numeric-id":74850,"id":"Q74850"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$EF5D9E36-A56F-4386-94CE-EE0278E1394B","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"d595b9251c15d55b682bbb22e27ac12f91c3ba38","datavalue":{"value":{"entity-type":"item","numeric-id":20394,"id":"Q20394"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$21F39230-43C1-412E-AC1A-43AB32714EA6","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P585","hash":"e3215dd36b6e3cb80512b1ea814f804a7ca80b0f","datavalue":{"value":{"entity-type":"item","numeric-id":51339,"id":"Q51339"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$6704E412-EAC6-40C4-BF37-B7ED964AE0E6","rank":"normal"}],"P223":[{"mainsnak":{"snaktype":"value","property":"P223","hash":"0971ee2a25b3f41bb583b60da0d905e5d204c186","datavalue":{"value":{"entity-type":"item","numeric-id":90615,"id":"Q90615"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$7D639E36-4BB0-4651-88FD-44B1D36DFA41","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"fb0fc9076a8b4619e43e60b5483603ab94524db6","datavalue":{"value":{"entity-type":"item","numeric-id":90617,"id":"Q90617"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$7B770C91-2999-4033-811B-3C08046EC86A","rank":"normal"},{"mainsnak":{"snaktype":"value","property":"P223","hash":"fe6e2941f81876a2de88a66f906dc5f1dfea017b","datavalue":{"value":{"entity-type":"item","numeric-id":90618,"id":"Q90618"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$44B9B05F-9802-4C9B-A815-CBC445113A65","rank":"normal"}],"P229":[{"mainsnak":{"snaktype":"value","property":"P229","hash":"237dc9f4aa03215e5e4a9b8260d8f061f5dba00b","datavalue":{"value":"polyRAD","type":"string"},"datatype":"external-id"},"type":"statement","id":"Q90619$8835CC87-5816-4CAC-9C7D-AA4038C19CA7","rank":"normal"}],"P114":[{"mainsnak":{"snaktype":"value","property":"P114","hash":"251fd109c2cd8c1ee39b48cd109c9f4b1c9fcf5c","datavalue":{"value":{"entity-type":"item","numeric-id":13519,"id":"Q13519"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$73C5EF42-91B6-4FE5-99C0-280361AA4DFA","rank":"normal"}],"P1460":[{"mainsnak":{"snaktype":"value","property":"P1460","hash":"908c3454b3659c4b140ccce33c5aee31081edc8d","datavalue":{"value":{"entity-type":"item","numeric-id":5976450,"id":"Q5976450"},"type":"wikibase-entityid"},"datatype":"wikibase-item"},"type":"statement","id":"Q90619$37D145DA-BE12-4B11-AF8D-5DBF400A544D","rank":"normal"}],"P170":[{"mainsnak":{"snaktype":"value","property":"P170","hash":"b16b0be70f1a27e366d10e082601245d3cb21009","datavalue":{"value":{"time":"+2026-03-22T00:00:00Z","timezone":0,"before":0,"after":0,"precision":11,"calendarmodel":"http://www.wikidata.org/entity/Q1985727"},"type":"time"},"datatype":"time"},"type":"statement","id":"Q90619$99A654CD-8D50-4AD5-8464-D63CB9B4D814","rank":"normal"}],"P1459":[{"mainsnak":{"snaktype":"value","property":"P1459","hash":"730ce53765b2b6b069cf15b563bb85f8aebe9292","datavalue":{"value":"Read depth data from genotyping-by-sequencing (GBS) or restriction   site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian  probability estimates of genotypes in polyploids or diploids.  The genotype   probabilities, posterior mean genotypes, or most probable genotypes can then  be exported for downstream analysis.  'polyRAD' is described by Clark et al.  (2019) <doi:10.1534/g3.118.200913>, and the Hind/He statistic for marker  filtering is described by Clark et al. (2022) <doi:10.1186/s12859-022-04635-9>.  A variant calling pipeline for highly duplicated genomes is also included and  is described by Clark et al. (2020, Version 1) <doi:10.1101/2020.01.11.902890>.","type":"string"},"datatype":"string"},"type":"statement","id":"Q90619$577DEC46-2C0A-4E43-BCDE-BDF63BE999ED","rank":"normal"}]},"sitelinks":{"mardi":{"site":"mardi","title":"PolyRAD","badges":[],"url":"https://portal.mardi4nfdi.de/wiki/PolyRAD"}}}}}