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However, conventional methods for enrichment     analysis do not take into account protein-protein interaction information,     resulting in incomplete conclusions. 'pathfindR' is a tool for enrichment     analysis utilizing active subnetworks. The main function identifies active     subnetworks in a protein-protein interaction network using a user-provided     list of genes and associated p values. It then performs enrichment analyses     on the identified subnetworks, identifying enriched terms (i.e. pathways or,     more broadly, gene sets) that possibly underlie the phenotype of interest.    'pathfindR' also offers functionalities to cluster the enriched terms and     identify representative terms in each cluster, to score the enriched terms     per sample and to visualize analysis results. The enrichment, clustering and     other methods implemented in 'pathfindR' are described in detail in     Ulgen E, Ozisik O, Sezerman OU. 2019. 'pathfindR': An R Package for     Comprehensive Identification of Enriched Pathways in Omics Data Through     Active Subnetworks. Front. 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