convertid (Q121688): Difference between revisions

← Older edit

@@ Property / last update @@
-September 2021Timestamp +2021-09-13T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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++2021-09-13T00:00:00Z
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@@ Property / last update: 13 September 2021 / rank @@
-Normal rank
@@ Property / software version identifier @@
+.1.1
@@ Property / software version identifier: 0.1.1 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.1 / qualifier @@
+publication date: 21 August 2021Timestamp +2021-08-21T00:00:00Z
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@@ Property / software version identifier @@
+.1.2
@@ Property / software version identifier: 0.1.2 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.2 / qualifier @@
+publication date: 2 September 2021Timestamp +2021-09-02T00:00:00Z
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@@ Property / software version identifier @@
+.1.5
@@ Property / software version identifier: 0.1.5 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.5 / qualifier @@
+publication date: 5 October 2023Timestamp +2023-10-05T00:00:00Z
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@@ Property / software version identifier @@
+.1.6
@@ Property / software version identifier: 0.1.6 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.6 / qualifier @@
+publication date: 6 October 2023Timestamp +2023-10-06T00:00:00Z
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@@ Property / software version identifier @@
+.1.7
@@ Property / software version identifier: 0.1.7 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.7 / qualifier @@
+publication date: 4 November 2023Timestamp +2023-11-04T00:00:00Z
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@@ Property / software version identifier @@
+.1.8
@@ Property / software version identifier: 0.1.8 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.8 / qualifier @@
+publication date: 29 November 2023Timestamp +2023-11-29T00:00:00Z
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+November 2023Timestamp +2023-11-29T00:00:00Z
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@@ Property / last update: 29 November 2023 / rank @@
+Normal rank
@@ Property / description @@
+Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but    that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function    in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the    'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes"    can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol()    attempts to determine the most likely current Gene Symbol.
+Normal rank
@@ Property / author @@
+Vidal Fey
@@ Property / author: Vidal Fey / rank @@
+Normal rank
@@ Property / author @@
+Henrik Edgren
@@ Property / author: Henrik Edgren / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / depends on software @@
+AnnotationDbi
@@ Property / depends on software: AnnotationDbi / rank @@
+Normal rank
@@ Property / imports @@
+org.Hs.eg.db
@@ Property / imports: org.Hs.eg.db / rank @@
+Normal rank
@@ Property / imports @@
+org.Mm.eg.db
@@ Property / imports: org.Mm.eg.db / rank @@
+Normal rank
@@ Property / imports @@
+plyr
@@ Property / imports: plyr / rank @@
+Normal rank
@@ Property / imports @@
+stringr
@@ Property / imports: stringr / rank @@
+Normal rank
@@ Property / imports @@
+biomaRt
@@ Property / imports: biomaRt / rank @@
+Normal rank
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+stats
@@ Property / imports: stats / rank @@
+Normal rank
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+xml2
@@ Property / imports: xml2 / rank @@
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+utils
@@ Property / imports: utils / rank @@
+Normal rank
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+rappdirs
@@ Property / imports: rappdirs / rank @@
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+assertthat
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+methods
@@ Property / imports: methods / rank @@
+Normal rank
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+httr
@@ Property / imports: httr / rank @@
+Normal rank
@@ Property / imports @@
+BiocFileCache
@@ Property / imports: BiocFileCache / rank @@
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:121688

Latest revision as of 19:56, 12 March 2024

Convert Gene IDs Between Each Other and Fetch Annotations from Biomart

Language	Label	Description	Also known as
English	convertid	Convert Gene IDs Between Each Other and Fetch Annotations from Biomart

Statements

instance of

R package

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software version identifier

0.1.3

publication date

13 September 2021

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0.1.1

publication date

21 August 2021

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0.1.2

publication date

2 September 2021

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0.1.5

publication date

5 October 2023

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0.1.6

publication date

6 October 2023

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0.1.7

publication date

4 November 2023

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0.1.8

publication date

29 November 2023

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29 November 2023

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description

Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.

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GNU General Public License, version 3.0

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depends on software

AnnotationDbi

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