iCellR (Q120377): Difference between revisions

← Older edit

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+Software:120377

Latest revision as of 19:56, 12 March 2024

Analyzing High-Throughput Single Cell Sequencing Data

Language	Label	Description	Also known as
English	iCellR	Analyzing High-Throughput Single Cell Sequencing Data

Statements

instance of

R package

0 references

software version identifier

1.6.5

publication date

9 October 2021

0 references

1.0.0

publication date

2 August 2019

0 references

1.1.2

publication date

10 September 2019

0 references

1.1.4

publication date

26 September 2019

0 references

1.2.0

publication date

15 October 2019

0 references

1.2.2

publication date

22 October 2019

0 references

1.2.5

publication date

4 November 2019

0 references

1.2.7

publication date

4 December 2019

0 references

1.2.9

publication date

17 January 2020

0 references

1.3.0

publication date

24 January 2020

0 references

1.3.1

publication date

26 February 2020

0 references

1.3.3

publication date

14 March 2020

0 references

1.4.0

publication date

3 April 2020

0 references

1.4.5

publication date

10 April 2020

0 references

1.5.0

publication date

8 May 2020

0 references

1.5.1

publication date

17 June 2020

0 references

1.5.4

publication date

3 July 2020

0 references

1.5.5

publication date

16 July 2020

0 references

1.5.8

publication date

9 October 2020

0 references

1.5.9

publication date

21 January 2021

0 references

1.6.0

publication date

30 January 2021

0 references

1.6.1

publication date

4 March 2021

0 references

1.6.4

publication date

27 April 2021

0 references

1.6.7

publication date

29 January 2024

0 references

0 references

0 references

29 January 2024

0 references

maintained by

Alireza Khodadadi-Jamayran

0 references

description

A toolkit that allows scientists to work with data from single cell sequencing technologies such as scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST). Single (i) Cell R package ('iCellR') provides unprecedented flexibility at every step of the analysis pipeline, including normalization, clustering, dimensionality reduction, imputation, visualization, and so on. Users can design both unsupervised and supervised models to best suit their research. In addition, the toolkit provides 2D and 3D interactive visualizations, differential expression analysis, filters based on cells, genes and clusters, data merging, normalizing for dropouts, data imputation methods, correcting for batch differences, pathway analysis, tools to find marker genes for clusters and conditions, predict cell types and pseudotime analysis. See Khodadadi-Jamayran, et al (2020) <doi:10.1101/2020.05.05.078550> and Khodadadi-Jamayran, et al (2020) <doi:10.1101/2020.03.31.019109> for more details.

0 references

author

Alireza Khodadadi-Jamayran

0 references

0 references

0 references

0 references

0 references