DR.SC (Q62544): Difference between revisions

← Older edit

@@ Property / last update @@
-April 2023Timestamp +2023-04-19T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-04-19T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 19 April 2023 / rank @@
-Normal rank
@@ Property / author @@
-Yi Yang
@@ Property / author: Yi Yang / rank @@
-Normal rank
@@ Property / author @@
-Jin Liu
@@ Property / author: Jin Liu / rank @@
-Normal rank
@@ Property / copyright license @@
-GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
-Normal rank
@@ Property / depends on software @@
-parallel
@@ Property / depends on software: parallel / rank @@
-Normal rank
@@ Property / depends on software @@
-spatstat.geom
@@ Property / depends on software: spatstat.geom / rank @@
-Normal rank
@@ Property / depends on software @@
-R
@@ Property / depends on software: R / rank @@
-Normal rank
@@ Property / imports @@
-ggplot2
@@ Property / imports: ggplot2 / rank @@
-Normal rank
@@ Property / imports @@
-MASS
@@ Property / imports: MASS / rank @@
-Normal rank
@@ Property / imports @@
-methods
@@ Property / imports: methods / rank @@
-Normal rank
@@ Property / imports @@
-S4Vectors
@@ Property / imports: S4Vectors / rank @@
-Normal rank
@@ Property / imports @@
-Seurat
@@ Property / imports: Seurat / rank @@
-Normal rank
@@ Property / imports @@
-stats
@@ Property / imports: stats / rank @@
-Normal rank
@@ Property / imports @@
-CompQuadForm
@@ Property / imports: CompQuadForm / rank @@
-Normal rank
@@ Property / imports @@
-irlba
@@ Property / imports: irlba / rank @@
-Normal rank
@@ Property / imports @@
-cowplot
@@ Property / imports: cowplot / rank @@
-Normal rank
@@ Property / imports @@
-GiRaF
@@ Property / imports: GiRaF / rank @@
-Normal rank
@@ Property / imports @@
-Matrix
@@ Property / imports: Matrix / rank @@
-Normal rank
@@ Property / imports @@
-mclust
@@ Property / imports: mclust / rank @@
-Normal rank
@@ Property / imports @@
-purrr
@@ Property / imports: purrr / rank @@
-Normal rank
@@ Property / imports @@
-RColorBrewer
@@ Property / imports: RColorBrewer / rank @@
-Normal rank
@@ Property / imports @@
-Rcpp
@@ Property / imports: Rcpp / rank @@
-Normal rank
@@ Property / cites work @@
-Joint dimension reduction and clustering analysis of single-cell RNA-seq and spatial transcriptomics data
-Normal rank
@@ Property / software version identifier @@
+.2
@@ Property / software version identifier: 2.2 / rank @@
+Normal rank
@@ Property / software version identifier: 2.2 / qualifier @@
+publication date: 19 November 2021Timestamp +2021-11-19T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-11-19T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
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 Before
 After
@@ Property / software version identifier @@
+.3
@@ Property / software version identifier: 2.3 / rank @@
+Normal rank
@@ Property / software version identifier: 2.3 / qualifier @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
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After 0
-Timestamp
++2021-11-21T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
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@@ Property / software version identifier @@
+.4
@@ Property / software version identifier: 2.4 / rank @@
+Normal rank
@@ Property / software version identifier: 2.4 / qualifier @@
+publication date: 7 January 2022Timestamp +2022-01-07T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2022-01-07T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
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@@ Property / software version identifier @@
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@@ Property / software version identifier: 2.5 / rank @@
+Normal rank
@@ Property / software version identifier: 2.5 / qualifier @@
+publication date: 6 February 2022Timestamp +2022-02-06T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2022-02-06T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
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@@ Property / software version identifier @@
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@@ Property / software version identifier: 2.6 / rank @@
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@@ Property / software version identifier: 2.6 / qualifier @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
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After 0
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-Timezone
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@@ Property / software version identifier: 2.7 / rank @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
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++2022-02-25T00:00:00Z
-Timezone
++00:00
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+Gregorian
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 Before
 After
@@ Property / software version identifier @@
+.8
@@ Property / software version identifier: 2.8 / rank @@
+Normal rank
@@ Property / software version identifier: 2.8 / qualifier @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-04-18T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
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 Before
 After
@@ Property / software version identifier @@
+.9
@@ Property / software version identifier: 2.9 / rank @@
+Normal rank
@@ Property / software version identifier: 2.9 / qualifier @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-05-27T00:00:00Z
-Timezone
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-Calendar
+Gregorian
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 Before
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@@ Property / software version identifier @@
+.0
@@ Property / software version identifier: 3.0 / rank @@
+Normal rank
@@ Property / software version identifier: 3.0 / qualifier @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
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-Timezone
++00:00
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-Precision
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 Before
 After
@@ Property / software version identifier @@
+.3
@@ Property / software version identifier: 3.3 / rank @@
+Normal rank
@@ Property / software version identifier: 3.3 / qualifier @@
+publication date: 9 August 2023Timestamp +2023-08-09T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-08-09T00:00:00Z
-Timezone
++00:00
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 Before
 After
@@ Property / last update @@
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Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-08-09T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 9 August 2023 / rank @@
+Normal rank
@@ Property / description @@
+Joint dimension reduction and spatial clustering is conducted for    Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to     Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) <doi:10.1093/nar/gkac219>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.
+Normal rank
@@ Property / author @@
+Wei Liu
@@ Property / author: Wei Liu / rank @@
+Normal rank
@@ Property / author @@
+Yi Yang
@@ Property / author: Yi Yang / rank @@
+Normal rank
@@ Property / author @@
+Jin Liu
@@ Property / author: Jin Liu / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / depends on software @@
+parallel
@@ Property / depends on software: parallel / rank @@
+Normal rank
@@ Property / depends on software @@
+spatstat.geom
@@ Property / depends on software: spatstat.geom / rank @@
+Normal rank
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 4.0.0
@@ Property / imports @@
+CompQuadForm
@@ Property / imports: CompQuadForm / rank @@
+Normal rank
@@ Property / imports @@
+irlba
@@ Property / imports: irlba / rank @@
+Normal rank
@@ Property / imports @@
+cowplot
@@ Property / imports: cowplot / rank @@
+Normal rank
@@ Property / imports @@
+ggplot2
@@ Property / imports: ggplot2 / rank @@
+Normal rank
@@ Property / imports @@
+GiRaF
@@ Property / imports: GiRaF / rank @@
+Normal rank
@@ Property / imports @@
+MASS
@@ Property / imports: MASS / rank @@
+Normal rank
@@ Property / imports @@
+Matrix
@@ Property / imports: Matrix / rank @@
+Normal rank
@@ Property / imports @@
+mclust
@@ Property / imports: mclust / rank @@
+Normal rank
@@ Property / imports @@
+methods
@@ Property / imports: methods / rank @@
+Normal rank
@@ Property / imports @@
+purrr
@@ Property / imports: purrr / rank @@
+Normal rank
@@ Property / imports @@
+S4Vectors
@@ Property / imports: S4Vectors / rank @@
+Normal rank
@@ Property / imports @@
+RColorBrewer
@@ Property / imports: RColorBrewer / rank @@
+Normal rank
@@ Property / imports @@
+Rcpp
@@ Property / imports: Rcpp / rank @@
+Normal rank
@@ Property / imports: Rcpp / qualifier @@
+software version identifier: ≥ 1.0.5
@@ Property / imports @@
+Seurat
@@ Property / imports: Seurat / rank @@
+Normal rank
@@ Property / imports @@
+stats
@@ Property / imports: stats / rank @@
+Normal rank
@@ Property / cites work @@
+Joint dimension reduction and clustering analysis of single-cell RNA-seq and spatial transcriptomics data
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:62544

Latest revision as of 18:56, 12 March 2024

Joint Dimension Reduction and Spatial Clustering

Language	Label	Description	Also known as
English	DR.SC	Joint Dimension Reduction and Spatial Clustering

Statements

instance of

R package

0 references

software version identifier

3.1

publication date

11 February 2023

0 references

3.2

publication date

19 April 2023

0 references

2.2

publication date

19 November 2021

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2.3

publication date

21 November 2021

0 references

2.4

publication date

7 January 2022

0 references

2.5

publication date

6 February 2022

0 references

2.6

publication date

23 February 2022

0 references

2.7

publication date

25 February 2022

0 references

2.8

publication date

18 April 2022

0 references

2.9

publication date

27 May 2022

0 references

3.0

publication date

15 November 2022

0 references

3.3

publication date

9 August 2023

0 references

0 references

0 references

9 August 2023

0 references

description

Joint dimension reduction and spatial clustering is conducted for Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) <doi:10.1093/nar/gkac219>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.

0 references

0 references

0 references

0 references

GNU General Public License, version 3.0

0 references

depends on software