nanostringr (Q99583): Difference between revisions

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@@ Property / last update @@
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Timezone +00:00
Calendar Gregorian
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@@ Property / copyright license: File License / rank @@
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-URL: https://cran.r-project.org/web/packages/nanostringr/LICENSE
@@ Property / cites work @@
-Single-Patient Molecular Testing with NanoString nCounter Data Using a Reference-Based Strategy for Batch Effect Correction
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@@ Property / description @@
+Provides quality control (QC), normalization, and batch    effect correction operations for 'NanoString nCounter' data, Talhouk    et al. (2016) <doi:10.1371/journal.pone.0153844>.  Various metrics are    used to determine which samples passed or failed QC.  Gene expression    should first be normalized to housekeeping genes, before a    reference-based approach is used to adjust for batch effects.  Raw    NanoString data can be imported in the form of Reporter Code Count    (RCC) files.
+Normal rank
@@ Property / author @@
+Derek Chiu
@@ Property / author: Derek Chiu / rank @@
+Normal rank
@@ Property / author @@
+Aline Talhouk
@@ Property / author: Aline Talhouk / rank @@
+Normal rank
@@ Property / author @@
+Samuel Leung
@@ Property / author: Samuel Leung / rank @@
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+MIT license
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+URL: https://cran.r-project.org/web/packages/nanostringr/LICENSE
@@ Property / depends on software @@
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@@ Property / depends on software: R / qualifier @@
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@@ Property / imports: ccaPP / rank @@
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+dplyr
@@ Property / imports: dplyr / rank @@
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@@ Property / imports: purrr / rank @@
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@@ Property / imports: rlang / rank @@
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@@ Property / imports @@
+tidyr
@@ Property / imports: tidyr / rank @@
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@@ Property / cites work @@
+Single-Patient Molecular Testing with NanoString nCounter Data Using a Reference-Based Strategy for Batch Effect Correction
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
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@@ links / mardi / name / links / mardi / name @@
+Software:99583

Latest revision as of 19:56, 12 March 2024

Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

Language	Label	Description	Also known as
English	nanostringr	Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

Statements

instance of

R package

0 references

software version identifier

0.4.0

publication date

20 August 2022

0 references

0.1.0

publication date

15 March 2019

0 references

0.1.1

publication date

25 March 2019

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0.1.2

publication date

3 April 2019

0 references

0.1.3

publication date

24 April 2019

0 references

0.1.4

publication date

9 May 2019

0 references

0.2.0

publication date

6 February 2021

0 references

0.3.0

publication date

25 May 2022

0 references

0.4.1

publication date

15 August 2023

0 references

0 references

0 references

0 references

15 August 2023

0 references

description

Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

0 references

0 references

0 references

0 references

0 references