rliger (Q127666): Difference between revisions

← Older edit

@@ Property / last update @@
-April 2021Timestamp +2021-04-19T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-04-19T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 19 April 2021 / rank @@
-Normal rank
@@ Property / maintained by @@
-Chao Gao
@@ Property / maintained by: Chao Gao / rank @@
-Normal rank
@@ Property / imports @@
-ggplot2
@@ Property / imports: ggplot2 / rank @@
-Normal rank
@@ Property / imports @@
-parallel
@@ Property / imports: parallel / rank @@
-Normal rank
@@ Property / imports @@
-stats
@@ Property / imports: stats / rank @@
-Normal rank
@@ Property / imports @@
-uwot
@@ Property / imports: uwot / rank @@
-Normal rank
@@ Property / imports @@
-utils
@@ Property / imports: utils / rank @@
-Normal rank
@@ Property / imports @@
-hdf5r
@@ Property / imports: hdf5r / rank @@
-Normal rank
@@ Property / imports @@
-Rcpp
@@ Property / imports: Rcpp / rank @@
-Normal rank
@@ Property / imports @@
-plyr
@@ Property / imports: plyr / rank @@
-Normal rank
@@ Property / imports @@
-FNN
@@ Property / imports: FNN / rank @@
-Normal rank
@@ Property / imports @@
-dplyr
@@ Property / imports: dplyr / rank @@
-Normal rank
@@ Property / imports @@
-ggrepel
@@ Property / imports: ggrepel / rank @@
-Normal rank
@@ Property / imports @@
-irlba
@@ Property / imports: irlba / rank @@
-Normal rank
@@ Property / imports @@
-ica
@@ Property / imports: ica / rank @@
-Normal rank
@@ Property / imports @@
-Rtsne
@@ Property / imports: Rtsne / rank @@
-Normal rank
@@ Property / imports @@
-riverplot
@@ Property / imports: riverplot / rank @@
-Normal rank
@@ Property / imports @@
-foreach
@@ Property / imports: foreach / rank @@
-Normal rank
@@ Property / imports @@
-doParallel
@@ Property / imports: doParallel / rank @@
-Normal rank
@@ Property / imports @@
-mclust
@@ Property / imports: mclust / rank @@
-Normal rank
@@ Property / imports @@
-psych
@@ Property / imports: psych / rank @@
-Normal rank
@@ Property / imports @@
-RANN
@@ Property / imports: RANN / rank @@
-Normal rank
@@ Property / imports @@
-rlang
@@ Property / imports: rlang / rank @@
-Normal rank
@@ Property / cites work @@
-Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity
-Normal rank
@@ Property / cites work @@
-Jointly defining cell types from multiple single-cell datasets using LIGER
-Normal rank
@@ Property / software version identifier @@
+.5.0
@@ Property / software version identifier: 0.5.0 / rank @@
+Normal rank
@@ Property / software version identifier: 0.5.0 / qualifier @@
+publication date: 25 January 2021Timestamp +2021-01-25T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-01-25T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.0
@@ Property / software version identifier: 1.0.0 / rank @@
+Normal rank
@@ Property / software version identifier: 1.0.0 / qualifier @@
+publication date: 20 April 2021Timestamp +2021-04-20T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-04-20T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.1
@@ Property / software version identifier: 1.0.1 / rank @@
+Normal rank
@@ Property / software version identifier: 1.0.1 / qualifier @@
+publication date: 8 November 2023Timestamp +2023-11-08T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-08T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update @@
+November 2023Timestamp +2023-11-08T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-08T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 8 November 2023 / rank @@
+Normal rank
@@ Property / maintained by @@
+Yichen Wang
@@ Property / maintained by: Yichen Wang / rank @@
+Normal rank
@@ Property / description @@
+Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
+Normal rank
@@ Property / author @@
+Joshua D. Welch
@@ Property / author: Joshua D. Welch / rank @@
+Normal rank
@@ Property / author @@
+Chao Gao
@@ Property / author: Chao Gao / rank @@
+Normal rank
@@ Property / author @@
+Jialin Liu
@@ Property / author: Jialin Liu / rank @@
+Normal rank
@@ Property / author @@
+Joshua Sodicoff
@@ Property / author: Joshua Sodicoff / rank @@
+Normal rank
@@ Property / author @@
+Velina Kozareva
@@ Property / author: Velina Kozareva / rank @@
+Normal rank
@@ Property / author @@
+Evan MacOsko
@@ Property / author: Evan MacOsko / rank @@
+Normal rank
@@ Property / author @@
+Yichen Wang
@@ Property / author: Yichen Wang / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / depends on software @@
+Matrix
@@ Property / depends on software: Matrix / rank @@
+Normal rank
@@ Property / depends on software @@
+methods
@@ Property / depends on software: methods / rank @@
+Normal rank
@@ Property / depends on software @@
+stats
@@ Property / depends on software: stats / rank @@
+Normal rank
@@ Property / depends on software @@
+utils
@@ Property / depends on software: utils / rank @@
+Normal rank
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 3.4
@@ Property / imports @@
+Rcpp
@@ Property / imports: Rcpp / rank @@
+Normal rank
@@ Property / imports: Rcpp / qualifier @@
+software version identifier: ≥ 0.12.10
@@ Property / imports @@
+plyr
@@ Property / imports: plyr / rank @@
+Normal rank
@@ Property / imports @@
+FNN
@@ Property / imports: FNN / rank @@
+Normal rank
@@ Property / imports @@
+dplyr
@@ Property / imports: dplyr / rank @@
+Normal rank
@@ Property / imports @@
+grid
@@ Property / imports: grid / rank @@
+Normal rank
@@ Property / imports @@
+ggrepel
@@ Property / imports: ggrepel / rank @@
+Normal rank
@@ Property / imports @@
+irlba
@@ Property / imports: irlba / rank @@
+Normal rank
@@ Property / imports @@
+ica
@@ Property / imports: ica / rank @@
+Normal rank
@@ Property / imports @@
+Rtsne
@@ Property / imports: Rtsne / rank @@
+Normal rank
@@ Property / imports @@
+ggplot2
@@ Property / imports: ggplot2 / rank @@
+Normal rank
@@ Property / imports @@
+foreach
@@ Property / imports: foreach / rank @@
+Normal rank
@@ Property / imports @@
+parallel
@@ Property / imports: parallel / rank @@
+Normal rank
@@ Property / imports @@
+doParallel
@@ Property / imports: doParallel / rank @@
+Normal rank
@@ Property / imports @@
+mclust
@@ Property / imports: mclust / rank @@
+Normal rank
@@ Property / imports @@
+psych
@@ Property / imports: psych / rank @@
+Normal rank
@@ Property / imports @@
+RANN
@@ Property / imports: RANN / rank @@
+Normal rank
@@ Property / imports @@
+uwot
@@ Property / imports: uwot / rank @@
+Normal rank
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports @@
+hdf5r
@@ Property / imports: hdf5r / rank @@
+Normal rank
@@ Property / imports @@
+scattermore
@@ Property / imports: scattermore / rank @@
+Normal rank
@@ Property / imports: scattermore / qualifier @@
+software version identifier: ≥ 0.7
@@ Property / imports @@
+patchwork
@@ Property / imports: patchwork / rank @@
+Normal rank
@@ Property / imports @@
+cowplot
@@ Property / imports: cowplot / rank @@
+Normal rank
@@ Property / cites work @@
+Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity
+Normal rank
@@ Property / cites work @@
+Jointly defining cell types from multiple single-cell datasets using LIGER
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:127666

Latest revision as of 19:56, 12 March 2024

Linked Inference of Genomic Experimental Relationships

Language	Label	Description	Also known as
English	rliger	Linked Inference of Genomic Experimental Relationships

Statements

instance of

R package

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software version identifier

1.0.0

publication date

19 April 2021

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0.5.0

publication date

25 January 2021

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1.0.0

publication date

20 April 2021

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1.0.1

publication date

8 November 2023

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8 November 2023

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maintained by

Yichen Wang

0 references

description

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

0 references

0 references

0 references

0 references

0 references

0 references