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Property / last update
27 April 2023
Timestamp+2023-04-27T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / last update: 27 April 2023 / rank
Normal rank
 
Property / cites work
 
Property / cites work: Phylogenetic Signal and Bias in Paleontology / rank
Normal rank
 
Property / cites work
 
Property / cites work: A new balance index for phylogenetic trees / rank
Normal rank
 
Property / cites work
 
Property / cites work: Nexus: An Extensible File Format for Systematic Information / rank
Normal rank
 
Property / software version identifier
 
0.1.2
Property / software version identifier: 0.1.2 / rank
 
Normal rank
Property / software version identifier: 0.1.2 / qualifier
 
publication date: 18 December 2019
Timestamp+2019-12-18T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
0.1.3
Property / software version identifier: 0.1.3 / rank
 
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Property / software version identifier: 0.1.3 / qualifier
 
publication date: 19 December 2019
Timestamp+2019-12-19T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
0.1.4
Property / software version identifier: 0.1.4 / rank
 
Normal rank
Property / software version identifier: 0.1.4 / qualifier
 
publication date: 4 March 2020
Timestamp+2020-03-04T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.0.0
Property / software version identifier: 1.0.0 / rank
 
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publication date: 8 June 2020
Timestamp+2020-06-08T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.1.0
Property / software version identifier: 1.1.0 / rank
 
Normal rank
Property / software version identifier: 1.1.0 / qualifier
 
publication date: 7 July 2020
Timestamp+2020-07-07T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.2.0
Property / software version identifier: 1.2.0 / rank
 
Normal rank
Property / software version identifier: 1.2.0 / qualifier
 
publication date: 3 August 2020
Timestamp+2020-08-03T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.3.0
Property / software version identifier: 1.3.0 / rank
 
Normal rank
Property / software version identifier: 1.3.0 / qualifier
 
publication date: 22 September 2020
Timestamp+2020-09-22T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.3.1
Property / software version identifier: 1.3.1 / rank
 
Normal rank
Property / software version identifier: 1.3.1 / qualifier
 
publication date: 3 October 2020
Timestamp+2020-10-03T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.4.0
Property / software version identifier: 1.4.0 / rank
 
Normal rank
Property / software version identifier: 1.4.0 / qualifier
 
publication date: 19 October 2020
Timestamp+2020-10-19T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.4.1
Property / software version identifier: 1.4.1 / rank
 
Normal rank
Property / software version identifier: 1.4.1 / qualifier
 
publication date: 9 December 2020
Timestamp+2020-12-09T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / software version identifier
 
1.4.2
Property / software version identifier: 1.4.2 / rank
 
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Property / software version identifier: 1.4.2 / qualifier
 
publication date: 26 January 2021
Timestamp+2021-01-26T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.4.3
Property / software version identifier: 1.4.3 / rank
 
Normal rank
Property / software version identifier: 1.4.3 / qualifier
 
publication date: 12 April 2021
Timestamp+2021-04-12T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.4.4
Property / software version identifier: 1.4.4 / rank
 
Normal rank
Property / software version identifier: 1.4.4 / qualifier
 
publication date: 20 April 2021
Timestamp+2021-04-20T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / software version identifier
 
1.4.5
Property / software version identifier: 1.4.5 / rank
 
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Property / software version identifier: 1.4.5 / qualifier
 
publication date: 23 June 2021
Timestamp+2021-06-23T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.5.0
Property / software version identifier: 1.5.0 / rank
 
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Property / software version identifier: 1.5.0 / qualifier
 
publication date: 8 September 2021
Timestamp+2021-09-08T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.5.1
Property / software version identifier: 1.5.1 / rank
 
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Property / software version identifier: 1.5.1 / qualifier
 
publication date: 6 October 2021
Timestamp+2021-10-06T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.6.0
Property / software version identifier: 1.6.0 / rank
 
Normal rank
Property / software version identifier: 1.6.0 / qualifier
 
publication date: 12 January 2022
Timestamp+2022-01-12T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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After0
Property / software version identifier
 
1.7.0
Property / software version identifier: 1.7.0 / rank
 
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Property / software version identifier: 1.7.0 / qualifier
 
publication date: 21 March 2022
Timestamp+2022-03-21T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / software version identifier
 
1.7.1
Property / software version identifier: 1.7.1 / rank
 
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Property / software version identifier: 1.7.1 / qualifier
 
publication date: 25 March 2022
Timestamp+2022-03-25T00:00:00Z
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Precision1 day
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Property / software version identifier
 
1.7.2
Property / software version identifier: 1.7.2 / rank
 
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Property / software version identifier: 1.7.2 / qualifier
 
publication date: 24 May 2022
Timestamp+2022-05-24T00:00:00Z
Timezone+00:00
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Property / software version identifier
 
1.7.3
Property / software version identifier: 1.7.3 / rank
 
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Property / software version identifier: 1.7.3 / qualifier
 
publication date: 20 July 2022
Timestamp+2022-07-20T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / software version identifier
 
1.8.0
Property / software version identifier: 1.8.0 / rank
 
Normal rank
Property / software version identifier: 1.8.0 / qualifier
 
publication date: 15 September 2022
Timestamp+2022-09-15T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / software version identifier
 
1.9.0
Property / software version identifier: 1.9.0 / rank
 
Normal rank
Property / software version identifier: 1.9.0 / qualifier
 
publication date: 28 November 2022
Timestamp+2022-11-28T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / software version identifier
 
1.10.0
Property / software version identifier: 1.10.0 / rank
 
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Property / software version identifier: 1.10.0 / qualifier
 
publication date: 19 August 2023
Timestamp+2023-08-19T00:00:00Z
Timezone+00:00
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Property / instance of
 
Property / instance of: R package / rank
 
Normal rank
Property / programmed in
 
Property / programmed in: R / rank
 
Normal rank
Property / maintained by
 
Property / maintained by: Martin R. Smith / rank
 
Normal rank
Property / last update
 
19 August 2023
Timestamp+2023-08-19T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
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Property / last update: 19 August 2023 / rank
 
Normal rank
Property / description
 
Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; tree rearrangement; analysis of tree shape; rooting of trees and extraction of subtrees; calculation and depiction of split support; plotting the position of rogue taxa (Klopfstein & Spasojevic 2019) <doi:10.1371/journal.pone.0212942>; calculation of ancestor-descendant relationships, of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>, and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>; artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information.
Property / description: Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; tree rearrangement; analysis of tree shape; rooting of trees and extraction of subtrees; calculation and depiction of split support; plotting the position of rogue taxa (Klopfstein & Spasojevic 2019) <doi:10.1371/journal.pone.0212942>; calculation of ancestor-descendant relationships, of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>, and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>; artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information. / rank
 
Normal rank
Property / author
 
Property / author: Martin R. Smith / rank
 
Normal rank
Property / copyright license
 
Property / copyright license: GNU General Public License / rank
 
Normal rank
Property / copyright license: GNU General Public License / qualifier
 
edition/version: ≥ 3 (English)
Property / depends on software
 
Property / depends on software: R / rank
 
Normal rank
Property / depends on software: R / qualifier
 
Property / depends on software
 
Property / depends on software: ape / rank
 
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Property / depends on software: ape / qualifier
 
Property / imports
 
Property / imports: bit64 / rank
 
Normal rank
Property / imports
 
Property / imports: lifecycle / rank
 
Normal rank
Property / imports
 
Property / imports: colorspace / rank
 
Normal rank
Property / imports
 
Property / imports: fastmatch / rank
 
Normal rank
Property / imports: fastmatch / qualifier
 
Property / imports
 
Property / imports: methods / rank
 
Normal rank
Property / imports
 
Property / imports: PlotTools / rank
 
Normal rank
Property / imports
 
Property / imports: RCurl / rank
 
Normal rank
Property / imports
 
Property / imports: R.cache / rank
 
Normal rank
Property / imports
 
Property / imports: Rdpack / rank
 
Normal rank
Property / imports: Rdpack / qualifier
 
Property / cites work
 
Property / cites work: Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix / rank
 
Normal rank
Property / cites work
 
Property / cites work: Phylogenetic Signal and Bias in Paleontology / rank
 
Normal rank
Property / cites work
 
Property / cites work: A new balance index for phylogenetic trees / rank
 
Normal rank
Property / cites work
 
Property / cites work: Nexus: An Extensible File Format for Systematic Information / rank
 
Normal rank
Property / MaRDI profile type
 
Property / MaRDI profile type: MaRDI software profile / rank
 
Normal rank
links / mardi / namelinks / mardi / name
 

Latest revision as of 19:56, 12 March 2024

Create, Modify and Analyse Phylogenetic Trees
Language Label Description Also known as
English
TreeTools
Create, Modify and Analyse Phylogenetic Trees

    Statements

    software version identifier
    1.9.1
    publication date
    20 March 2023
    0 references
    1.9.2
    publication date
    27 April 2023
    0 references
    0.1.2
    publication date
    18 December 2019
    0 references
    0.1.3
    publication date
    19 December 2019
    0 references
    0.1.4
    publication date
    4 March 2020
    0 references
    1.0.0
    publication date
    8 June 2020
    0 references
    1.1.0
    publication date
    7 July 2020
    0 references
    1.2.0
    publication date
    3 August 2020
    0 references
    1.3.0
    publication date
    22 September 2020
    0 references
    1.3.1
    publication date
    3 October 2020
    0 references
    1.4.0
    publication date
    19 October 2020
    0 references
    1.4.1
    publication date
    9 December 2020
    0 references
    1.4.2
    publication date
    26 January 2021
    0 references
    1.4.3
    publication date
    12 April 2021
    0 references
    1.4.4
    publication date
    20 April 2021
    0 references
    1.4.5
    publication date
    23 June 2021
    0 references
    1.5.0
    publication date
    8 September 2021
    0 references
    1.5.1
    publication date
    6 October 2021
    0 references
    1.6.0
    publication date
    12 January 2022
    0 references
    1.7.0
    publication date
    21 March 2022
    0 references
    1.7.1
    publication date
    25 March 2022
    0 references
    1.7.2
    publication date
    24 May 2022
    0 references
    1.7.3
    publication date
    20 July 2022
    0 references
    1.8.0
    publication date
    15 September 2022
    0 references
    1.9.0
    publication date
    28 November 2022
    0 references
    1.10.0
    publication date
    19 August 2023
    0 references
    CRAN project
    TreeTools
    0 references
    instance of
    R package
    0 references
    programmed in
    R
    0 references
    last update
    19 August 2023
    0 references
    description
    Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; tree rearrangement; analysis of tree shape; rooting of trees and extraction of subtrees; calculation and depiction of split support; plotting the position of rogue taxa (Klopfstein & Spasojevic 2019) <doi:10.1371/journal.pone.0212942>; calculation of ancestor-descendant relationships, of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>, and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>; artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information.
    0 references
    author
    Martin R. Smith
    0 references
    imports
    bit64
    0 references
    lifecycle
    0 references
    colorspace
    0 references
    fastmatch
    software version identifier
    ≥ 1.1.3
    0 references
    methods
    0 references
    PlotTools
    0 references
    RCurl
    0 references
    R.cache
    0 references
    Rdpack
    software version identifier
    ≥ 2.3
    0 references
     
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