RCPA (Q159073): Difference between revisions

← Older edit

@@ Property / last update @@
-May 2023Timestamp +2023-05-11T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-05-11T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 11 May 2023 / rank @@
-Normal rank
@@ Property / maintained by @@
-Zeynab Maghsoudi
@@ Property / maintained by: Zeynab Maghsoudi / rank @@
-Normal rank
@@ Property / imports @@
-DESeq2
@@ Property / imports: DESeq2 / rank @@
-Normal rank
@@ Property / imports @@
-GEOquery
@@ Property / imports: GEOquery / rank @@
-Normal rank
@@ Property / imports @@
-affyPLM
@@ Property / imports: affyPLM / rank @@
-Normal rank
@@ Property / imports @@
-edgeR
@@ Property / imports: edgeR / rank @@
-Normal rank
@@ Property / imports @@
-limma
@@ Property / imports: limma / rank @@
-Normal rank
@@ Property / imports @@
-oligo
@@ Property / imports: oligo / rank @@
-Normal rank
@@ Property / imports @@
-ggnewscale
@@ Property / imports: ggnewscale / rank @@
-Normal rank
@@ Property / imports @@
-ggpattern
@@ Property / imports: ggpattern / rank @@
-Normal rank
@@ Property / imports @@
-AnnotationDbi
@@ Property / imports: AnnotationDbi / rank @@
-Normal rank
@@ Property / imports @@
-BiocManager
@@ Property / imports: BiocManager / rank @@
-Normal rank
@@ Property / imports @@
-Biobase
@@ Property / imports: Biobase / rank @@
-Normal rank
@@ Property / imports @@
-affy
@@ Property / imports: affy / rank @@
-Normal rank
@@ Property / imports @@
-stringr
@@ Property / imports: stringr / rank @@
-Normal rank
@@ Property / imports @@
-ggrepel
@@ Property / imports: ggrepel / rank @@
-Normal rank
@@ Property / imports @@
-graph
@@ Property / imports: graph / rank @@
-Normal rank
@@ Property / imports @@
-httr
@@ Property / imports: httr / rank @@
-Normal rank
@@ Property / imports @@
-rlang
@@ Property / imports: rlang / rank @@
-Normal rank
@@ Property / imports @@
-scales
@@ Property / imports: scales / rank @@
-Normal rank
@@ Property / cites work @@
-limma powers differential expression analyses for RNA-sequencing and microarray studies
-Normal rank
@@ Property / cites work @@
-Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-Normal rank
@@ Property / cites work @@
-edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-Normal rank
@@ Property / software version identifier @@
+.1.1
@@ Property / software version identifier: 0.1.1 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.1 / qualifier @@
+publication date: 13 July 2023Timestamp +2023-07-13T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-07-13T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.1.2
@@ Property / software version identifier: 0.1.2 / rank @@
+Normal rank
@@ Property / software version identifier: 0.1.2 / qualifier @@
+publication date: 21 November 2023Timestamp +2023-11-21T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-21T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.2.1
@@ Property / software version identifier: 0.2.1 / rank @@
+Normal rank
@@ Property / software version identifier: 0.2.1 / qualifier @@
+publication date: 30 November 2023Timestamp +2023-11-30T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-30T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update @@
+November 2023Timestamp +2023-11-30T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-30T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 30 November 2023 / rank @@
+Normal rank
@@ Property / maintained by @@
+Ha Nguyen
@@ Property / maintained by: Ha Nguyen / rank @@
+Normal rank
@@ Property / description @@
+Provides a set of functions to perform pathway analysis and meta analysis from multiple gene expression datasets, as well as visualization of the results. The package is a wrapper of the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arXiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu, Z. (2012) <https://CRAN.R-project.org/package=CePa>.
+Normal rank
@@ Property / author @@
+Ha Nguyen
@@ Property / author: Ha Nguyen / rank @@
+Normal rank
@@ Property / author @@
+Zeynab Maghsoudi
@@ Property / author: Zeynab Maghsoudi / rank @@
+Normal rank
@@ Property / author @@
+Phi Hung Bya
@@ Property / author: Phi Hung Bya / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / depends on software @@
+tidyr
@@ Property / depends on software: tidyr / rank @@
+Normal rank
@@ Property / depends on software @@
+dplyr
@@ Property / depends on software: dplyr / rank @@
+Normal rank
@@ Property / depends on software @@
+ggplot2
@@ Property / depends on software: ggplot2 / rank @@
+Normal rank
@@ Property / depends on software @@
+utils
@@ Property / depends on software: utils / rank @@
+Normal rank
@@ Property / depends on software @@
+stats
@@ Property / depends on software: stats / rank @@
+Normal rank
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 4.0
@@ Property / imports @@
+AnnotationDbi
@@ Property / imports: AnnotationDbi / rank @@
+Normal rank
@@ Property / imports @@
+SummarizedExperiment
@@ Property / imports: SummarizedExperiment / rank @@
+Normal rank
@@ Property / imports @@
+BiocManager
@@ Property / imports: BiocManager / rank @@
+Normal rank
@@ Property / imports @@
+Biobase
@@ Property / imports: Biobase / rank @@
+Normal rank
@@ Property / imports @@
+DESeq2
@@ Property / imports: DESeq2 / rank @@
+Normal rank
@@ Property / imports @@
+GEOquery
@@ Property / imports: GEOquery / rank @@
+Normal rank
@@ Property / imports @@
+edgeR
@@ Property / imports: edgeR / rank @@
+Normal rank
@@ Property / imports @@
+limma
@@ Property / imports: limma / rank @@
+Normal rank
@@ Property / imports @@
+stringr
@@ Property / imports: stringr / rank @@
+Normal rank
@@ Property / imports: stringr / qualifier @@
+software version identifier: ≥ 1.5.0
@@ Property / imports @@
+ggnewscale
@@ Property / imports: ggnewscale / rank @@
+Normal rank
@@ Property / imports @@
+ggrepel
@@ Property / imports: ggrepel / rank @@
+Normal rank
@@ Property / imports @@
+graph
@@ Property / imports: graph / rank @@
+Normal rank
@@ Property / imports @@
+httr
@@ Property / imports: httr / rank @@
+Normal rank
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports @@
+ggpattern
@@ Property / imports: ggpattern / rank @@
+Normal rank
@@ Property / imports @@
+scales
@@ Property / imports: scales / rank @@
+Normal rank
@@ Property / imports @@
+RobustRankAggreg
@@ Property / imports: RobustRankAggreg / rank @@
+Normal rank
@@ Property / imports @@
+methods
@@ Property / imports: methods / rank @@
+Normal rank
@@ Property / imports @@
+jsonlite
@@ Property / imports: jsonlite / rank @@
+Normal rank
@@ Property / imports @@
+IRdisplay
@@ Property / imports: IRdisplay / rank @@
+Normal rank
@@ Property / cites work @@
+limma powers differential expression analyses for RNA-sequencing and microarray studies
+Normal rank
@@ Property / cites work @@
+Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
+Normal rank
@@ Property / cites work @@
+edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:159073

Latest revision as of 20:00, 12 March 2024

Consensus Pathway Analysis

Language	Label	Description	Also known as
English	RCPA	Consensus Pathway Analysis

Statements

instance of

R package

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software version identifier

0.1.0

publication date

11 May 2023

0 references

0.1.1

publication date

13 July 2023

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0.1.2

publication date

21 November 2023

0 references

0.2.1

publication date

30 November 2023

0 references

0 references

0 references

30 November 2023

0 references

maintained by

Ha Nguyen

0 references

description

Provides a set of functions to perform pathway analysis and meta analysis from multiple gene expression datasets, as well as visualization of the results. The package is a wrapper of the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arXiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu, Z. (2012) <https://CRAN.R-project.org/package=CePa>.

0 references

0 references

0 references

0 references

GNU General Public License, version 3.0

0 references

depends on software