Software:5979771

CRANdartR.popgenMaRDI QIDQ5979771

Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis

Carlo Pacioni, Jose Luis Mijangos, Bernd Gruber, Arthur Georges

Last update: 21 November 2023

Copyright license: GNU General Public License

Software version identifier: 0.32

Description

Facilitates the analysis of SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. 'dartR.popgen' provides a suit of functions to analyse such data in a population genetics context. It provides several functions to calculate population genetic metrics and to study population structure. Quite a few functions need additional software to be able to run (gl.run.structure(), gl.blast(), gl.LDNe()). You find detailed description in the help pages how to download and link the packages so the function can run the software. 'dartR.popgen' is part of the the 'dartRverse' suit of packages. Gruber et al. (2018) <doi:10.1111/1755-0998.12745>. Mijangos et al. (2022) <doi:10.1111/2041-210X.13918>.

Cites work

• dartr: An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing
• dartR v2: An accessible genetic analysis platform for conservation, ecology and agriculture