ulrb (Q5979968): Difference between revisions
From MaRDI portal
Removed claims |
Added link to MaRDI item. |
||
| (2 intermediate revisions by 2 users not shown) | |||
| Property / programmed in | |||
| Property / programmed in: R / rank | |||
Normal rank | |||
| Property / depends on software | |||
| Property / depends on software: R / rank | |||
Normal rank | |||
| Property / depends on software: R / qualifier | |||
software version identifier: ≥ 2.10 | |||
| Property / MaRDI profile type | |||
| Property / MaRDI profile type: MaRDI software profile / rank | |||
Normal rank | |||
| links / mardi / name | links / mardi / name | ||
Latest revision as of 20:10, 12 March 2024
Unsupervised Learning Based Definition of Microbial Rare Biosphere
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | ulrb |
Unsupervised Learning Based Definition of Microbial Rare Biosphere |
Statements
A tool to define rare biosphere. 'ulrb' solves the problem of the definition of rarity by replacing human decision with an unsupervised machine learning algorithm (partitioning around medoids, or k-medoids). This algorithm works for any type of microbiome data, provided there is an abundance score for each phylogenetic unit. For validation of this method to several kinds of molecular data and environments, please see Pascoal et al, 2023 (in preparation). Preliminary data suggest this method also works well for non-microbiome data, if there is a species abundance table.
0 references
17 November 2023
0 references
