SimInf (Q26820): Difference between revisions
From MaRDI portal
Created claim: source code repository (P339): https://github.com/cran/SimInf, #quickstatements; #temporary_batch_1711027662947 |
Swh import (talk | contribs) SWHID from Software Heritage |
||||||||||||||
Property / Software Heritage ID | |||||||||||||||
Property / Software Heritage ID: swh:1:snp:90e40e93985bdb018ca9292266cb04d7f37dc8ed / rank | |||||||||||||||
Normal rank | |||||||||||||||
Property / Software Heritage ID: swh:1:snp:90e40e93985bdb018ca9292266cb04d7f37dc8ed / qualifier | |||||||||||||||
Property / Software Heritage ID: swh:1:snp:90e40e93985bdb018ca9292266cb04d7f37dc8ed / qualifier | |||||||||||||||
point in time: 11 January 2024
|
Latest revision as of 18:10, 21 March 2024
A Framework for Data-Driven Stochastic Disease Spread Simulations
Language | Label | Description | Also known as |
---|---|---|---|
English | SimInf |
A Framework for Data-Driven Stochastic Disease Spread Simulations |
Statements
20 December 2023
0 references
Provides an efficient and very flexible framework to conduct data-driven epidemiological modeling in realistic large scale disease spread simulations. The framework integrates infection dynamics in subpopulations as continuous-time Markov chains using the Gillespie stochastic simulation algorithm and incorporates available data such as births, deaths and movements as scheduled events at predefined time-points. Using C code for the numerical solvers and 'OpenMP' (if available) to divide work over multiple processors ensures high performance when simulating a sample outcome. One of our design goals was to make the package extendable and enable usage of the numerical solvers from other R extension packages in order to facilitate complex epidemiological research. The package contains template models and can be extended with user-defined models. For more details see the paper by Widgren, Bauer, Eriksson and Engblom (2019) <doi:10.18637/jss.v091.i12>. The package also provides functionality to fit models to time series data using the Approximate Bayesian Computation Sequential Monte Carlo ('ABC-SMC') algorithm of Toni and others (2009) <doi:10.1098/rsif.2008.0172>.
0 references