OncoBayes2 (Q52525): Difference between revisions

← Older edit

@@ Property / last update @@
-March 2023Timestamp +2023-03-03T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-03-03T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 3 March 2023 / rank @@
-Normal rank
@@ Property / author @@
-Lukas A. Widmer
@@ Property / author: Lukas A. Widmer / rank @@
-Normal rank
@@ Property / author @@
-Andrew Bean
@@ Property / author: Andrew Bean / rank @@
-Normal rank
@@ Property / copyright license @@
-GNU General Public License
@@ Property / copyright license: GNU General Public License / rank @@
-Normal rank
@@ Property / copyright license: GNU General Public License / qualifier @@
-edition/version: ≥ 3 (English)
@@ Property / imports @@
-methods
@@ Property / imports: methods / rank @@
-Normal rank
@@ Property / imports @@
-ggplot2
@@ Property / imports: ggplot2 / rank @@
-Normal rank
@@ Property / imports: ggplot2 / qualifier @@
-software version identifier: ≥ 2.2.1
@@ Property / imports @@
-tidyselect
@@ Property / imports: tidyselect / rank @@
-Normal rank
@@ Property / imports @@
-utils
@@ Property / imports: utils / rank @@
-Normal rank
@@ Property / imports @@
-stats
@@ Property / imports: stats / rank @@
-Normal rank
@@ Property / imports @@
-Rcpp
@@ Property / imports: Rcpp / rank @@
-Normal rank
@@ Property / imports @@
-RcppParallel
@@ Property / imports: RcppParallel / rank @@
-Normal rank
@@ Property / imports @@
-rstan
@@ Property / imports: rstan / rank @@
-Normal rank
@@ Property / imports @@
-rstantools
@@ Property / imports: rstantools / rank @@
-Normal rank
@@ Property / imports @@
-posterior
@@ Property / imports: posterior / rank @@
-Normal rank
@@ Property / imports @@
-assertthat
@@ Property / imports: assertthat / rank @@
-Normal rank
@@ Property / imports @@
-checkmate
@@ Property / imports: checkmate / rank @@
-Normal rank
@@ Property / imports @@
-Formula
@@ Property / imports: Formula / rank @@
-Normal rank
@@ Property / imports @@
-bayesplot
@@ Property / imports: bayesplot / rank @@
-Normal rank
@@ Property / imports @@
-dplyr
@@ Property / imports: dplyr / rank @@
-Normal rank
@@ Property / imports @@
-tibble
@@ Property / imports: tibble / rank @@
-Normal rank
@@ Property / imports @@
-tidyr
@@ Property / imports: tidyr / rank @@
-Normal rank
@@ Property / imports @@
-abind
@@ Property / imports: abind / rank @@
-Normal rank
@@ Property / imports @@
-scales
@@ Property / imports: scales / rank @@
-Normal rank
@@ Property / imports @@
-rlang
@@ Property / imports: rlang / rank @@
-Normal rank
@@ Property / imports @@
-matrixStats
@@ Property / imports: matrixStats / rank @@
-Normal rank
@@ Property / cites work @@
-Critical aspects of the Bayesian approach to phase I cancer trials
-Normal rank
@@ Property / cites work @@
-On the Use of Co-Data in Clinical Trials
@@ Property / cites work: On the Use of Co-Data in Clinical Trials / rank @@
-Normal rank
@@ Property / depends on software @@
-R
@@ Property / depends on software: R / rank @@
-Normal rank
@@ Property / software version identifier @@
+.4-4
@@ Property / software version identifier: 0.4-4 / rank @@
+Normal rank
@@ Property / software version identifier: 0.4-4 / qualifier @@
+publication date: 29 August 2019Timestamp +2019-08-29T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2019-08-29T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.5-3
@@ Property / software version identifier: 0.5-3 / rank @@
+Normal rank
@@ Property / software version identifier: 0.5-3 / qualifier @@
+publication date: 15 November 2019Timestamp +2019-11-15T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2019-11-15T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.5-4
@@ Property / software version identifier: 0.5-4 / rank @@
+Normal rank
@@ Property / software version identifier: 0.5-4 / qualifier @@
+publication date: 19 November 2019Timestamp +2019-11-19T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2019-11-19T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.5-8
@@ Property / software version identifier: 0.5-8 / rank @@
+Normal rank
@@ Property / software version identifier: 0.5-8 / qualifier @@
+publication date: 12 December 2019Timestamp +2019-12-12T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2019-12-12T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.6-0
@@ Property / software version identifier: 0.6-0 / rank @@
+Normal rank
@@ Property / software version identifier: 0.6-0 / qualifier @@
+publication date: 11 February 2020Timestamp +2020-02-11T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2020-02-11T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.6-3
@@ Property / software version identifier: 0.6-3 / rank @@
+Normal rank
@@ Property / software version identifier: 0.6-3 / qualifier @@
+publication date: 19 March 2020Timestamp +2020-03-19T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2020-03-19T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.6-4
@@ Property / software version identifier: 0.6-4 / rank @@
+Normal rank
@@ Property / software version identifier: 0.6-4 / qualifier @@
+publication date: 7 April 2020Timestamp +2020-04-07T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2020-04-07T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.6-5
@@ Property / software version identifier: 0.6-5 / rank @@
+Normal rank
@@ Property / software version identifier: 0.6-5 / qualifier @@
+publication date: 7 May 2020Timestamp +2020-05-07T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2020-05-07T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.7-0
@@ Property / software version identifier: 0.7-0 / rank @@
+Normal rank
@@ Property / software version identifier: 0.7-0 / qualifier @@
+publication date: 7 May 2021Timestamp +2021-05-07T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-05-07T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-1
@@ Property / software version identifier: 0.8-1 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-1 / qualifier @@
+publication date: 2 September 2021Timestamp +2021-09-02T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-09-02T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-2
@@ Property / software version identifier: 0.8-2 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-2 / qualifier @@
+publication date: 14 September 2021Timestamp +2021-09-14T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-09-14T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-4
@@ Property / software version identifier: 0.8-4 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-4 / qualifier @@
+publication date: 18 February 2022Timestamp +2022-02-18T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-02-18T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-5
@@ Property / software version identifier: 0.8-5 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-5 / qualifier @@
+publication date: 1 March 2022Timestamp +2022-03-01T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-03-01T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-6
@@ Property / software version identifier: 0.8-6 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-6 / qualifier @@
+publication date: 2 May 2022Timestamp +2022-05-02T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-05-02T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-7
@@ Property / software version identifier: 0.8-7 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-7 / qualifier @@
+publication date: 25 August 2022Timestamp +2022-08-25T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-08-25T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.8-9
@@ Property / software version identifier: 0.8-9 / rank @@
+Normal rank
@@ Property / software version identifier: 0.8-9 / qualifier @@
+publication date: 20 July 2023Timestamp +2023-07-20T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-07-20T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update @@
+July 2023Timestamp +2023-07-20T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-07-20T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 20 July 2023 / rank @@
+Normal rank
@@ Property / description @@
+Bayesian logistic regression model with optional  EXchangeability-NonEXchangeability parameter modelling for flexible  borrowing from historical or concurrent data-sources. The safety model  can guide dose-escalation decisions for adaptive oncology Phase I  dose-escalation trials which involve an arbitrary number of  drugs. Please refer to Neuenschwander et al. (2008)  <doi:10.1002/sim.3230> and Neuenschwander et al. (2016)  <doi:10.1080/19466315.2016.1174149> for details on the methodology.
+Normal rank
@@ Property / author @@
+Sebastian Weber
@@ Property / author: Sebastian Weber / rank @@
+Normal rank
@@ Property / author @@
+Lukas A. Widmer
@@ Property / author: Lukas A. Widmer / rank @@
+Normal rank
@@ Property / author @@
+Andrew Bean
@@ Property / author: Andrew Bean / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License
@@ Property / copyright license: GNU General Public License / rank @@
+Normal rank
@@ Property / copyright license: GNU General Public License / qualifier @@
+edition/version: ≥ 3 (English)
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 3.5.0
@@ Property / imports @@
+methods
@@ Property / imports: methods / rank @@
+Normal rank
@@ Property / imports @@
+Rcpp
@@ Property / imports: Rcpp / rank @@
+Normal rank
@@ Property / imports: Rcpp / qualifier @@
+software version identifier: ≥ 0.12.0
@@ Property / imports @@
+RcppParallel
@@ Property / imports: RcppParallel / rank @@
+Normal rank
@@ Property / imports: RcppParallel / qualifier @@
+software version identifier: ≥ 5.0.1
@@ Property / imports @@
+rstan
@@ Property / imports: rstan / rank @@
+Normal rank
@@ Property / imports: rstan / qualifier @@
+software version identifier: ≥ 2.19.3
@@ Property / imports @@
+rstantools
@@ Property / imports: rstantools / rank @@
+Normal rank
@@ Property / imports: rstantools / qualifier @@
+software version identifier: ≥ 2.3.1
@@ Property / imports @@
+posterior
@@ Property / imports: posterior / rank @@
+Normal rank
@@ Property / imports: posterior / qualifier @@
+software version identifier: ≥ 1.4.0
@@ Property / imports @@
+assertthat
@@ Property / imports: assertthat / rank @@
+Normal rank
@@ Property / imports: assertthat / qualifier @@
+software version identifier: ≥ 0.2.1
@@ Property / imports @@
+checkmate
@@ Property / imports: checkmate / rank @@
+Normal rank
@@ Property / imports @@
+Formula
@@ Property / imports: Formula / rank @@
+Normal rank
@@ Property / imports @@
+bayesplot
@@ Property / imports: bayesplot / rank @@
+Normal rank
@@ Property / imports: bayesplot / qualifier @@
+software version identifier: ≥ 1.4.0
@@ Property / imports @@
+ggplot2
@@ Property / imports: ggplot2 / rank @@
+Normal rank
@@ Property / imports: ggplot2 / qualifier @@
+software version identifier: ≥ 2.2.1
@@ Property / imports @@
+dplyr
@@ Property / imports: dplyr / rank @@
+Normal rank
@@ Property / imports: dplyr / qualifier @@
+software version identifier: ≥ 0.8.0
@@ Property / imports @@
+tibble
@@ Property / imports: tibble / rank @@
+Normal rank
@@ Property / imports @@
+tidyr
@@ Property / imports: tidyr / rank @@
+Normal rank
@@ Property / imports: tidyr / qualifier @@
+software version identifier: ≥ 1.0.0
@@ Property / imports @@
+abind
@@ Property / imports: abind / rank @@
+Normal rank
@@ Property / imports @@
+scales
@@ Property / imports: scales / rank @@
+Normal rank
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports: rlang / qualifier @@
+software version identifier: ≥ 0.3.0
@@ Property / imports @@
+tidyselect
@@ Property / imports: tidyselect / rank @@
+Normal rank
@@ Property / imports @@
+utils
@@ Property / imports: utils / rank @@
+Normal rank
@@ Property / imports @@
+stats
@@ Property / imports: stats / rank @@
+Normal rank
@@ Property / imports @@
+matrixStats
@@ Property / imports: matrixStats / rank @@
+Normal rank
@@ Property / cites work @@
+Critical aspects of the Bayesian approach to phase I cancer trials
+Normal rank
@@ Property / cites work @@
+On the Use of Co-Data in Clinical Trials
@@ Property / cites work: On the Use of Co-Data in Clinical Trials / rank @@
+Normal rank
@@ Property / source code repository @@
+https://github.com/cran/OncoBayes2
@@ Property / source code repository: https://github.com/cran/OncoBayes2 / rank @@
+Normal rank
@@ Property / Software Heritage ID @@
+swh:1:snp:d9a2dc45a343cd68fc140be86cacebc6c0b79661
+Normal rank
+source code repository: https://github.com/cran/OncoBayes2
+point in time: 17 August 2023Timestamp +2023-08-17T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-08-17T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ links / mardi / name / links / mardi / name @@
+Software:52525

Latest revision as of 03:33, 22 March 2024

Bayesian Logistic Regression for Oncology Dose-Escalation Trials

Language	Label	Description	Also known as
English	OncoBayes2	Bayesian Logistic Regression for Oncology Dose-Escalation Trials

Statements

0 references

0 references

software version identifier

0.8-8

publication date

3 March 2023

0 references

0.4-4

publication date

29 August 2019

0 references

0.5-3

publication date

15 November 2019

0 references

0.5-4

publication date

19 November 2019

0 references

0.5-8

publication date

12 December 2019

0 references

0.6-0

publication date

11 February 2020

0 references

0.6-3

publication date

19 March 2020

0 references

0.6-4

publication date

7 April 2020

0 references

0.6-5

publication date

7 May 2020

0 references

0.7-0

publication date

7 May 2021

0 references

0.8-1

publication date

2 September 2021

0 references

0.8-2

publication date

14 September 2021

0 references

0.8-4

publication date

18 February 2022

0 references

0.8-5

publication date

1 March 2022

0 references

0.8-6

publication date

2 May 2022

0 references

0.8-7

publication date

25 August 2022

0 references

0.8-9

publication date

20 July 2023

0 references

0 references

0 references

0 references

MaRDI software profile

0 references

last update

20 July 2023

0 references

description

Bayesian logistic regression model with optional EXchangeability-NonEXchangeability parameter modelling for flexible borrowing from historical or concurrent data-sources. The safety model can guide dose-escalation decisions for adaptive oncology Phase I dose-escalation trials which involve an arbitrary number of drugs. Please refer to Neuenschwander et al. (2008) <doi:10.1002/sim.3230> and Neuenschwander et al. (2016) <doi:10.1080/19466315.2016.1174149> for details on the methodology.

0 references

0 references

0 references

0 references

GNU General Public License

edition/version

≥ 3 (English)