Progress in developing Poisson-Boltzmann equation solvers (Q2863922): Difference between revisions

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+https://doi.org/10.2478/mlbmb-2013-0002
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+Goal-oriented adaptivity and multilevel preconditioning for the Poisson-Boltzmann equation
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+An Efficient Higher-Order Fast Multipole Boundary Element Solution for Poisson–Boltzmann-Based Molecular Electrostatics
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+A New Paradigm for Parallel Adaptive Meshing Algorithms
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+A fast, high-order algorithm for the solution of surface scattering problems: Basic implementation, tests, and applications
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+A weighted adaptive least-squares finite element method for the Poisson-Boltzmann equation
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+The Finite Element Approximation of the Nonlinear Poisson–Boltzmann Equation
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+Differential geometry based solvation model. I: Eulerian formulation
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+A generalized Douglas ADI method for solving three‐dimensional parabolic differential equations on multilayers
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+Between Algorithm and Model: Different Molecular Surface Definitions for the Poisson-Boltzmann Based Electrostatic Characterization of Biomolecules in Solution
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+A general formulation of alternating direction methods. I: Parabolic and hyperbolic problems
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+A new version of the fast multipole method for screened Coulomb interactions in three dimensions
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+On the fast matrix multiplication in the boundary element method by panel clustering
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+Adaptive numerical treatment of elliptic systems on manifolds
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+Adaptive Finite Element Modeling Techniques for the Poisson-Boltzmann Equation
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+Parallel Newton-Krylov-Schwarz algorithms for the three-dimensional Poisson-Boltzmann equation in numerical simulation of colloidal particle interactions
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+Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation
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+The electric potential of a macromolecule in a solvent: A fundamental approach
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+AFMPB: an adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems
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+Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes. I: Finite element solutions
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+Q3406191
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+Monte Carlo Methods for Calculating Some Physical Properties of Large Molecules
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+An Adaptive, Finite Difference Solver for the Nonlinear Poisson-Boltzmann Equation with Applications to Biomolecular Computations
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+Solution of acoustic scattering problems by means of second kind integral equations
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+Q3406187
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+Multiscale Bases for the Sparse Representation of Boundary Integral Operators on Complex Geometry
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+A new minimization protocol for solving nonlinear Poisson-Boltzmann mortar finite element equation
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+Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns
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+Three-dimensional matched interface and boundary (MIB) method for treating geometric singularities
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+On the fictitious-domain and interpolation formulations of the matched interface and boundary (MIB) method
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+High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources
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