Portal/TA4: Difference between revisions
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== Mission == | == Mission == | ||
As mathematical | As mathematical models, software and workflows can be applied to a wide range of disciplines from natural and life sciences to the humanities, it is crucial to reflect the disciplines needs for FAIR research data management and standardized descriptions of these artifacts. Starting from case studies, TA4 aims at working together with interdisciplinary partners and other NFDI consortia to develop interdisciplinary workflows, standardize mathematical descriptions and create a platform for exchange. These activities, together with the standardization of data within the NFDI framework, is intended to emulate the FAIR principles and provides a dependable platform from which other disciplines could benefit. | ||
Standardization of mathematical descriptions for us means the creation of a database for mathematical models. This development is in progress and is called [[MathModDB]]. | Standardization of mathematical descriptions for us means the creation of a database for mathematical models. This development is in progress and is called [[MathModDB]]. | ||
Moreover, [[MaRDMO]] will function as an interface, enabling researchers from diverse disciplines to document their interdisciplinary workflows and mathematical models through the Research Data Management Organiser (RDMO). | |||
== Use Cases / Workflows == | == Use Cases / Workflows == | ||
The documentation of interdisciplinary workflows | The documentation of interdisciplinary workflows reflects Measure M4.1. of the MaRDI research program. It is a crucial part to understand the requirements of the applied sciences with respect to their mathematical grounding. Moreover, it serves as a predecessing step toward the development of a mathematical standardization. Please find a list of interdisciplinary use cases our work is based on here: [https://portal.mardi4nfdi.de/wiki/Portal/TA4_Workflows Workflows] | ||
Also see a list in alphabetical order [https://portal.mardi4nfdi.de/wiki/Category:Workflow here] | Also see a list in alphabetical order [https://portal.mardi4nfdi.de/wiki/Category:Workflow here] | ||
== MathModDB - A database for mathematical models == | == MathModDB - A database for mathematical models == | ||
As models are a crucial step in the model-simulation pipeline, and mathematical standardization is elementary in our mission statement, the development of a database for mathematical | As models are a crucial step in the model-simulation pipeline, and mathematical standardization is elementary in our mission statement, the development of a database for mathematical models is justified and reflects Measure M4.2. in the MaRDI research program. The database will be set up as an ontology / knowledge graph, called [[MathModDB]]. | ||
== | == MaRDMO - A Plugin for the Research Data Management Organiser== | ||
MaRDMO is a plugin designed to streamline the documentation of workflows (Measure M4.1). Primarily utilized for Model-Simulation-Optimization workflows in the numerical domain, MaRDMO also exhibits versatility in accommodating workflows from other domains such as algebra. Integrated within RDMO, it offers a structured questionnaire guiding researchers through the documentation process. By fetching additional information from established sources, MaRDMO ensures comprehensive documentation while minimizing duplication of effort. Its seamless integration with RDMO enhances usability, allowing for the semi-automatic generation of workflow documentation. Recently, the MathModDB ontology (Measure M4.2) was integrated into MaRDMO to enhance the documentation of mathematical models within the workflows, further improving its functionality. | |||
Click [https://portal.mardi4nfdi.de/wiki/MaRDMO here] to get further information. | |||
== Materials, HowTos, Tutorials, ... == | == Materials, HowTos, Tutorials, ... == | ||
| Line 49: | Line 52: | ||
== Publications == | == Publications == | ||
Publications of TA4 personnel related to MaRDI | Publications of TA4 personnel related to MaRDI | ||
=== 2022 === | |||
Benner P., Burger, M., Göddeke D., Görgen, C., Himpe, C., Hintermüller, M., Heiland, J., Koprucki T., Ohlberger, M., Rave S., Reidelbach M., Saak, J., Schöbel, A., Tabelow, K., and Weber, M., 2022. Die mathematische Forschungsdateninitiative in der NFDI: MaRDI. GAMM-Rundbrief, 1, pp.40-43. | |||
Reidelbach, M., Weber, M. MaRDI - The mathematical Research Data Initiative. Aktionstag Forschungsdaten FU Berlin. [https://doi.org/10.5281/zenodo.7397588 https://doi.org/10.5281/zenodo.7397588] | |||
=== 2023 === | === 2023 === | ||
Boege, T., Fritze, R., Görgen, C., Hanselman, J., Iglezakis, D., Kastner, L., Koprucki, T., Krause, T.H., Lehrenfeld, C., Polla, S. and Reidelbach, M., 2023. Data management planning in the German mathematical community. European Mathematical Society Magazine, (130), pp.40-47. [https://doi.org/10.4171/mag/152 https://doi.org/10.4171/mag/152] | |||
MaRDI Consortium, 2023. Research Data Management Planning in Mathematics. [https://doi.org/10.5281/zenodo.10018246 https://doi.org/10.5281/zenodo.10018246] | |||
Reidelbach, M., Ferrer. E and Weber M., 2023. MaRDMO Plugin - Document and Retrieve Workflows Using the MaRDI Portal. In Proceedings of the Conference on Research Data Infrastructure (Vol. 1). [https://doi.org/10.52825/cordi.v1i.254 https://doi.org/10.52825/cordi.v1i.254] | |||
Schembera, B., Wübbeling, F., Kleikamp, H., Biedinger, C., Fiedler, J., Reidelbach, M., Shehu, A., Schmidt, B., Koprucki, T., Iglezakis, D. and Göddeke, D., 2023. Ontologies for Models and Algorithms in Applied Mathematics and Related Disciplines. arXiv preprint arXiv:[https://arxiv.org/pdf/2310.20443 2310.20443]. | Schembera, B., Wübbeling, F., Kleikamp, H., Biedinger, C., Fiedler, J., Reidelbach, M., Shehu, A., Schmidt, B., Koprucki, T., Iglezakis, D. and Göddeke, D., 2023. Ontologies for Models and Algorithms in Applied Mathematics and Related Disciplines. arXiv preprint arXiv:[https://arxiv.org/pdf/2310.20443 2310.20443]. | ||
Schembera, B., Riethmüller, C. and Göddeke, D., [https://www.simtech2023.uni-stuttgart.de/documents/Theme-4/Schembera-Bjoern.pdf Enabling FAIR Data in Computational Science, Engineering and Mathematics through Knowledge Graphs.] | Schembera, B., Riethmüller, C. and Göddeke, D., [https://www.simtech2023.uni-stuttgart.de/documents/Theme-4/Schembera-Bjoern.pdf Enabling FAIR Data in Computational Science, Engineering and Mathematics through Knowledge Graphs.] | ||
Schembera, B., Wübbeling, F., Koprucki, T., Biedinger, C., Reidelbach, M., Schmidt, B., Göddeke, D. and Fiedler, J., 2023, September. Building Ontologies and Knowledge Graphs for Mathematics and its Applications. In Proceedings of the Conference on Research Data Infrastructure (Vol. 1). [https://doi.org/10.52825/cordi.v1i.255 https://doi.org/10.52825/cordi.v1i.255] == | Schembera, B., Wübbeling, F., Koprucki, T., Biedinger, C., Reidelbach, M., Schmidt, B., Göddeke, D. and Fiedler, J., 2023, September. Building Ontologies and Knowledge Graphs for Mathematics and its Applications. In Proceedings of the Conference on Research Data Infrastructure (Vol. 1). [https://doi.org/10.52825/cordi.v1i.255 https://doi.org/10.52825/cordi.v1i.255] | ||
=== 2024 === | |||
Diederichs, K., Krause, C., Lemaire, M., Reidelbach, M. and Windeck, J., 2024. A Vision for Data Management Plans in the NFDI. [https://doi.org/10.5281/zenodo.10570654 https://doi.org/10.5281/zenodo.10570654] | |||
Reidelbach, M., Schembera, B., Weber, M. (2024). Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. In: Buzzard, K., Dickenstein, A., Eick, B., Leykin, A., Ren, Y. (eds) Mathematical Software – ICMS 2024. ICMS 2024. Lecture Notes in Computer Science, vol 14749. Springer, Cham. https://doi.org/10.1007/978-3-031-64529-7_27 | |||
== Talks == | |||
Talks given by TA4 personnel related to MaRDI | |||
=== 2022 === | |||
Reidelbach, M., 21.09.2022. Mathematical Research Data Initiative. Talk @ "Digital Humanities meet Mathematics" Workshop, Berlin. | |||
=== 2023 === | |||
Reidelbach, M., 29.03.2023. MaRDMO - An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ 9th RDMO Community Meeting, Online. | |||
Reidelbach, M., 17.04.2023. MaRDMO - An RDMO plugin to document and query MSO Workflows using the MaRDI Knowledge Graph. Talk @ Leibniz MMS Days, Potsdam. [https://doi.org/10.5446/62069 https://doi.org/10.5446/62069] | |||
Reidelbach, M., 26.05.2023. MaRDMO - An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ Meeting of 'Data Management Planning' working group of NFDI Section Common Infrastructures, Online. | |||
Reidelbach, M., 29.06.2023. MaRDMO - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Workshop @ NFDI-MATWREK Conference, Siegburg. | |||
Reidelbach, M., 25.09.2023. MaRDMO Plugin - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Talk @ MaRDI Mini-Symposium in DMV, Illmenau. | |||
Weber, M., 26.09.2023. MaRDMO – An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ KLAIM, Kaiserslautern. | |||
Reidelbach, M., 27.09.2023. MaRDMO Plugin - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Talk @ NFDI4Ing Conference, Online. [https://doi.org/10.5281/zenodo.8388577 https://doi.org/10.5281/zenodo.8388577] | |||
Reidelbach, M., 10.10.2023. MaRDMO – Document and Query Interdisciplinary Workflows Using the MaRDI Portal. Talk @ "Maths meets Information Specialists" Workshop, Leipzig. | |||
=== 2024 === | |||
Reidelbach, M., 12.03.2024. Mathematical Research Data Initiative - Vision and Services. Talk @ Math+ Conference "Interpretations, Explanations, and Knowledge Gain", Berlin. | |||
Reidelbach, M., 24.07.2024. Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. Talk @ ICMS 2024, Durham, England. | |||
== Workshops == | |||
Workshops that have been co-organized by TA4 personnel | |||
* [https://www.ada.fu-berlin.de/ada-labs/dihma-lab/index.html Digital Humanities meet Mathematics] (20/21.09.2022, Berlin) | |||
* Was könn(t)en DMPs eigentlich alles leisten? (14.06.2023, Online) | |||
* [https://www.mis.mpg.de/events/series/maths-meets-information-specialists Math meets Information Specialists] (9.-11.10.2023, Leipzig) | |||
* [https://www.nfdi.de/tf-ethik-workshop-februar-2024/ Finding the E in ELSA. Exploring Ethical Challenges across the NFDI] (28.2.2024, online) | |||
Latest revision as of 14:36, 25 August 2024
Task Area 4: Cooperation with Other Disciplines
Mission
As mathematical models, software and workflows can be applied to a wide range of disciplines from natural and life sciences to the humanities, it is crucial to reflect the disciplines needs for FAIR research data management and standardized descriptions of these artifacts. Starting from case studies, TA4 aims at working together with interdisciplinary partners and other NFDI consortia to develop interdisciplinary workflows, standardize mathematical descriptions and create a platform for exchange. These activities, together with the standardization of data within the NFDI framework, is intended to emulate the FAIR principles and provides a dependable platform from which other disciplines could benefit.
Standardization of mathematical descriptions for us means the creation of a database for mathematical models. This development is in progress and is called MathModDB.
Moreover, MaRDMO will function as an interface, enabling researchers from diverse disciplines to document their interdisciplinary workflows and mathematical models through the Research Data Management Organiser (RDMO).
Use Cases / Workflows
The documentation of interdisciplinary workflows reflects Measure M4.1. of the MaRDI research program. It is a crucial part to understand the requirements of the applied sciences with respect to their mathematical grounding. Moreover, it serves as a predecessing step toward the development of a mathematical standardization. Please find a list of interdisciplinary use cases our work is based on here: Workflows
Also see a list in alphabetical order here
MathModDB - A database for mathematical models
As models are a crucial step in the model-simulation pipeline, and mathematical standardization is elementary in our mission statement, the development of a database for mathematical models is justified and reflects Measure M4.2. in the MaRDI research program. The database will be set up as an ontology / knowledge graph, called MathModDB.
MaRDMO - A Plugin for the Research Data Management Organiser
MaRDMO is a plugin designed to streamline the documentation of workflows (Measure M4.1). Primarily utilized for Model-Simulation-Optimization workflows in the numerical domain, MaRDMO also exhibits versatility in accommodating workflows from other domains such as algebra. Integrated within RDMO, it offers a structured questionnaire guiding researchers through the documentation process. By fetching additional information from established sources, MaRDMO ensures comprehensive documentation while minimizing duplication of effort. Its seamless integration with RDMO enhances usability, allowing for the semi-automatic generation of workflow documentation. Recently, the MathModDB ontology (Measure M4.2) was integrated into MaRDMO to enhance the documentation of mathematical models within the workflows, further improving its functionality.
Click here to get further information.
Materials, HowTos, Tutorials, ...
Team
Fraunhofer Institute for Industrial Mathematics, Kaiserslautern
University of Stuttgart
Weierstrass-Institute for Applied Analysis and Stochastics, Berlin
Zuse Institute Berlin
Publications
Publications of TA4 personnel related to MaRDI
2022
Benner P., Burger, M., Göddeke D., Görgen, C., Himpe, C., Hintermüller, M., Heiland, J., Koprucki T., Ohlberger, M., Rave S., Reidelbach M., Saak, J., Schöbel, A., Tabelow, K., and Weber, M., 2022. Die mathematische Forschungsdateninitiative in der NFDI: MaRDI. GAMM-Rundbrief, 1, pp.40-43.
Reidelbach, M., Weber, M. MaRDI - The mathematical Research Data Initiative. Aktionstag Forschungsdaten FU Berlin. https://doi.org/10.5281/zenodo.7397588
2023
Boege, T., Fritze, R., Görgen, C., Hanselman, J., Iglezakis, D., Kastner, L., Koprucki, T., Krause, T.H., Lehrenfeld, C., Polla, S. and Reidelbach, M., 2023. Data management planning in the German mathematical community. European Mathematical Society Magazine, (130), pp.40-47. https://doi.org/10.4171/mag/152
MaRDI Consortium, 2023. Research Data Management Planning in Mathematics. https://doi.org/10.5281/zenodo.10018246
Reidelbach, M., Ferrer. E and Weber M., 2023. MaRDMO Plugin - Document and Retrieve Workflows Using the MaRDI Portal. In Proceedings of the Conference on Research Data Infrastructure (Vol. 1). https://doi.org/10.52825/cordi.v1i.254
Schembera, B., Wübbeling, F., Kleikamp, H., Biedinger, C., Fiedler, J., Reidelbach, M., Shehu, A., Schmidt, B., Koprucki, T., Iglezakis, D. and Göddeke, D., 2023. Ontologies for Models and Algorithms in Applied Mathematics and Related Disciplines. arXiv preprint arXiv:2310.20443.
Schembera, B., Riethmüller, C. and Göddeke, D., Enabling FAIR Data in Computational Science, Engineering and Mathematics through Knowledge Graphs.
Schembera, B., Wübbeling, F., Koprucki, T., Biedinger, C., Reidelbach, M., Schmidt, B., Göddeke, D. and Fiedler, J., 2023, September. Building Ontologies and Knowledge Graphs for Mathematics and its Applications. In Proceedings of the Conference on Research Data Infrastructure (Vol. 1). https://doi.org/10.52825/cordi.v1i.255
2024
Diederichs, K., Krause, C., Lemaire, M., Reidelbach, M. and Windeck, J., 2024. A Vision for Data Management Plans in the NFDI. https://doi.org/10.5281/zenodo.10570654
Reidelbach, M., Schembera, B., Weber, M. (2024). Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. In: Buzzard, K., Dickenstein, A., Eick, B., Leykin, A., Ren, Y. (eds) Mathematical Software – ICMS 2024. ICMS 2024. Lecture Notes in Computer Science, vol 14749. Springer, Cham. https://doi.org/10.1007/978-3-031-64529-7_27
Talks
Talks given by TA4 personnel related to MaRDI
2022
Reidelbach, M., 21.09.2022. Mathematical Research Data Initiative. Talk @ "Digital Humanities meet Mathematics" Workshop, Berlin.
2023
Reidelbach, M., 29.03.2023. MaRDMO - An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ 9th RDMO Community Meeting, Online.
Reidelbach, M., 17.04.2023. MaRDMO - An RDMO plugin to document and query MSO Workflows using the MaRDI Knowledge Graph. Talk @ Leibniz MMS Days, Potsdam. https://doi.org/10.5446/62069
Reidelbach, M., 26.05.2023. MaRDMO - An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ Meeting of 'Data Management Planning' working group of NFDI Section Common Infrastructures, Online.
Reidelbach, M., 29.06.2023. MaRDMO - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Workshop @ NFDI-MATWREK Conference, Siegburg.
Reidelbach, M., 25.09.2023. MaRDMO Plugin - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Talk @ MaRDI Mini-Symposium in DMV, Illmenau.
Weber, M., 26.09.2023. MaRDMO – An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ KLAIM, Kaiserslautern.
Reidelbach, M., 27.09.2023. MaRDMO Plugin - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Talk @ NFDI4Ing Conference, Online. https://doi.org/10.5281/zenodo.8388577
Reidelbach, M., 10.10.2023. MaRDMO – Document and Query Interdisciplinary Workflows Using the MaRDI Portal. Talk @ "Maths meets Information Specialists" Workshop, Leipzig.
2024
Reidelbach, M., 12.03.2024. Mathematical Research Data Initiative - Vision and Services. Talk @ Math+ Conference "Interpretations, Explanations, and Knowledge Gain", Berlin.
Reidelbach, M., 24.07.2024. Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. Talk @ ICMS 2024, Durham, England.
Workshops
Workshops that have been co-organized by TA4 personnel
- Digital Humanities meet Mathematics (20/21.09.2022, Berlin)
- Was könn(t)en DMPs eigentlich alles leisten? (14.06.2023, Online)
- Math meets Information Specialists (9.-11.10.2023, Leipzig)
- Finding the E in ELSA. Exploring Ethical Challenges across the NFDI (28.2.2024, online)
