COMPARING PARTITIONED COUPLING VS. MONOLITHIC BLOCK PRECONDITIONING FOR SOLVING STOKES-DARCY SYSTEMS: Difference between revisions

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== Problem Statement ==
== Problem Statement ==


Instationary, coupled Stokes-Darcy two-domain problem: coupled systems of free flow adjacent to permeable (porous) media Two approaches (partioned coupling and monolitihic block preconditioning) are compared against each other and with the direct solving.
Instationary, coupled Stokes-Darcy two-domain problem: [[coupled systems]] of free flow adjacent to permeable (porous) media Two approaches ([[PARTITIONED_COUPLING_FOR_SOLVING_STOKES-DARCY_SYSTEMS | partioned coupling]] and [[MONOLITHIC_APPROACH_FOR_SOLVING_STOKES-DARCY_SYSTEMS | monolitihic block preconditioning]]) are compared against each other and with the direct solving.


=== Object of Research and Objective ===
=== Object of Research and Objective ===


Analysis of the runtime and memory behavior of the two methods "partioned coupling" and "monolitihic block preconditioning" in comparison to the direct solver. The motivation for this is to avoid problems when using simple direct solvers (sparse direct solvers for the (linearized) subproblems): bad parallel scaling, untrustworthy solution with bad conditioning.
Analysis of the runtime and memory behavior of the two methods "[[PARTITIONED_COUPLING_FOR_SOLVING_STOKES-DARCY_SYSTEMS | partioned coupling]]" and "[[MONOLITHIC_APPROACH_FOR_SOLVING_STOKES-DARCY_SYSTEMS |monolitihic block preconditioning]]" in comparison to the direct solver. The motivation for this is to avoid problems when using simple direct solvers (sparse direct solvers for the (linearized) subproblems): bad parallel scaling, untrustworthy solution with bad conditioning.


=== Procedure ===
=== Procedure ===
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=== Variables ===
=== Variables ===


{|
{| class="wikitable"
! Name
! Name
! Unit
! Unit
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| Pressure (Dirichlet pressure)
| Pressure (Dirichlet pressure)
| -
| -
| $p$
| <math>p</math>
|-
|-
| Velocity (Neumann velocity)
| Velocity (Neumann velocity)
| -
| -
| $v$
| <math>v</math>
|}
|}


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=== Process Steps ===
=== Process Steps ===


{|
{| class="wikitable"
! Name
! Name
! Description
! Description
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| Partioned Coupling Solving
| Partioned Coupling Solving
| Numerical Solution of the Problem with Partioned Coupling
| Numerical Solution of the Problem with Partioned Coupling
| LGS; $S^{ff}$: $v^{pm}*n$; $S^{pm}$: $p^{ff}$
| LGS; <math>S^{ff}</math>: <math>v^{pm}*n</math>; <math>S^{pm}</math>: <math>p^{ff}</math>
| LGS_solved_cp, runtime_cp
| LGS_solved_cp, runtime_cp
| Solver (UMFPACK, PD-GMRS, Bi-CGSTAB), Preconditioner (Uzawa, AMG), Coupling (preCICE, Picard iteration; inverse least-squares interface quasi-Newton)
| Solver (UMFPACK, PD-GMRS, Bi-CGSTAB), Preconditioner (Uzawa, AMG), Coupling (preCICE, Picard iteration; inverse least-squares interface quasi-Newton)
Line 101: Line 101:
=== Applied Methods ===
=== Applied Methods ===


{|
{| class="wikitable"
! ID
! ID
! Name
! Name
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! implemented by
! implemented by
|-
|-
| wikidata:Q7001954
| wikidata:[[wikidata:Q7001954|Q7001954]]
| Dirichlet-Neumann coupling
| Dirichlet-Neumann coupling
| Coupling
| Coupling
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|
|
|-
|-
| wikidata:Q1683631
| wikidata:[[wikidata:Q1683631|Q1683631]]
| Picard iteration mit fixed-point iteration
| Picard iteration mit fixed-point iteration
| Coupling
| Coupling
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|
|
|-
|-
| wikidata:Q25098909
| wikidata:[[wikidata:Q25098909|Q25098909]]
| inverse least-squares interface quasi-Newton
| inverse least-squares interface quasi-Newton
| Coupling
| Coupling
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|
|
|-
|-
| wikidata:Q1069090
| wikidata:[[wikidata:Q1069090|Q1069090]]
| block-Gauss-Seidel method
| block-Gauss-Seidel method
| Preconditioner
| Preconditioner
Line 132: Line 132:
|
|
|-
|-
| wikidata:Q2467290
| wikidata:[[wikidata:Q2467290|Q2467290]]
| Umfpack
| Umfpack
| Solver
| Solver
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|
|
|-
|-
| wikidata:Q56564057
| wikidata:[[wikidata:Q56564057|Q56564057]]
| PD-GMRES
| PD-GMRES
| Solver
| Solver
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|
|
|-
|-
| wikidata:Q56560244
| wikidata:[[wikidata:Q56560244|Q56560244]]
| Bi-CGSTAB
| Bi-CGSTAB
| Solver
| Solver
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|
|
|-
|-
| wikidata:Q1471828
| wikidata:[[wikidata:Q1471828|Q1471828]]
| AMG method
| AMG method
| Preconditioner
| Preconditioner
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|
|
|-
|-
| wikidata: Q17144437
| wikidata: [[wikidata:Q17144437|Q17144437]]
| Uzawa-iterations
| Uzawa-iterations
| Preconditioner
| Preconditioner
Line 162: Line 162:
|
|
|-
|-
| wikidata:Q1654069
| wikidata:[[wikidata:Q1654069|Q1654069]]
| ILU(0) factorization
| ILU(0) factorization
| Preconditioner
| Preconditioner
Line 171: Line 171:
=== Software used ===
=== Software used ===


{|
{| class="wikitable"
! ID
! ID
! Name
! Name
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! Dependencies
! Dependencies
! versioned
! versioned
! published
! Published
! documented
! Documented
|-
|-
| sw:8713
| sw:[https://swmath.org/software/8713 8713]
| preCICE
| preCICE
| Library for coupling simulations
| Library for coupling simulations
Line 189: Line 189:
| Linux, Boost, MPI, ...
| Linux, Boost, MPI, ...
| [https://github.com/precice/precice https://github.com/precice/precice]
| [https://github.com/precice/precice https://github.com/precice/precice]
| doi:10.18419/darus-2125
| https://doi.org/10.18419/darus-2125
| [https://precice.org/docs.html https://precice.org/docs.html]
| [https://precice.org/docs.html https://precice.org/docs.html]
|-
|-
| sw:14293
| sw:[https://swmath.org/software/14293 14293]
| DuMux
| DuMux
| DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media
| DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media
Line 202: Line 202:
| [https://dumux.org/docs/ https://dumux.org/docs/]
| [https://dumux.org/docs/ https://dumux.org/docs/]
|-
|-
| sw:18749
| sw:[https://swmath.org/software/18749 18749]
| ISTL
| ISTL
| Iterative Solver Template Library” (ISTL) which is part of the “Distributed and Unified Numerics Environment” (DUNE).
| Iterative Solver Template Library” (ISTL) which is part of the “Distributed and Unified Numerics Environment” (DUNE).
Line 209: Line 209:
| Linux, DuNE (C++ Framework)
| Linux, DuNE (C++ Framework)
| [https://gitlab.dune-project.org/core/dune-istl https://gitlab.dune-project.org/core/dune-istl]
| [https://gitlab.dune-project.org/core/dune-istl https://gitlab.dune-project.org/core/dune-istl]
| doi:10.1007/978-3-540-75755-9_82
| https://doi.org/10.1007/978-3-540-75755-9_82
| [https://www.dune-project.org/modules/dune-istl/ https://www.dune-project.org/modules/dune-istl/]
| [https://www.dune-project.org/modules/dune-istl/ https://www.dune-project.org/modules/dune-istl/]
|}
|}
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=== Hardware ===
=== Hardware ===


{|
{| class="wikitable"
! ID
! ID
! Name
! Name
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=== Input Data ===
=== Input Data ===


{|
{| class="wikitable"
! ID
! ID
! Name
! Name
Line 240: Line 240:
! Format Representation
! Format Representation
! Format Exchange
! Format Exchange
! binary/text
! Binary/Text
! proprietary
! Proprietary
! to publish
! To Publish
! to archive
! To Archive
|-
|-
|
|
| LGS
| LGS
| O($2*10^6$) Matrix size
| O(<math>2*10^6</math>) Matrix size
| Data structure in DUNE/DuMux
| Data structure in DUNE/DuMux
|
|
Line 259: Line 259:
=== Output Data ===
=== Output Data ===


{|
{| class="wikitable"
! ID
! ID
! Name
! Name
Line 266: Line 266:
! Format Representation
! Format Representation
! Format Exchange
! Format Exchange
! binary/text
! Binary/Text
! proprietary
! Proprietary
! to publish
! To Publish
! to archive
! To Archive
|-
|-
|
|
Line 293: Line 293:
| ?
| ?
|-
|-
| arxiv:2108.13229
| arxiv:[https://arxiv.org/pdf/2108.13229.pdf 2108.13229]
| Paper
| Paper
| O(KB)
| O(KB)
Line 309: Line 309:
=== Mathematical Reproducibility ===
=== Mathematical Reproducibility ===


yes, by all parameters
Yes, by all parameters


=== Runtime Reproducibility ===
=== Runtime Reproducibility ===


yes, for same input samples
Yes, for same input samples


=== Reproducibility of Results ===
=== Reproducibility of Results ===
Line 342: Line 342:


wikidata: [https://www.wikidata.org/wiki/ https://www.wikidata.org/wiki/]
wikidata: [https://www.wikidata.org/wiki/ https://www.wikidata.org/wiki/]
[[Category:Workflow]]

Latest revision as of 16:19, 15 November 2022

COMPARING PARTITIONED COUPLING VS. MONOLITHIC BLOCK PRECONDITIONING FOR SOLVING STOKES-DARCY SYSTEMS

PID (if applicable): arxiv:2108.13229

Problem Statement

Instationary, coupled Stokes-Darcy two-domain problem: coupled systems of free flow adjacent to permeable (porous) media Two approaches ( partioned coupling and monolitihic block preconditioning) are compared against each other and with the direct solving.

Object of Research and Objective

Analysis of the runtime and memory behavior of the two methods " partioned coupling" and "monolitihic block preconditioning" in comparison to the direct solver. The motivation for this is to avoid problems when using simple direct solvers (sparse direct solvers for the (linearized) subproblems): bad parallel scaling, untrustworthy solution with bad conditioning.

Procedure

Perform three types of solving a Darcy-Stokes system, namely Partioned Coupling, Monolithic Block Preconditioning, and Direct Solving, with subsequent comparison of runtime and memory behavior.

Involved Disciplines

Environmental Systems, Mathematics

Data Streams

Model

Stokes flow in the free-flow domain Darcy’s law for the porous domain

Discretization

  • Time: first-order backward Euler scheme
  • Space: finite volumes
    • Porous Domain (Darcy): mit two-point flux approximation for pressure
    • Free Flow domain (Stokes): staggered grid for pressure and velocity, upwind scheme for approximation of fluxes

Variables

Name Unit Symbol
Pressure (Dirichlet pressure) - p
Velocity (Neumann velocity) - v

Process Informationen

Process Steps

Name Description Input Output Method Parameter Environment Mathematical Area
Partioned Coupling Solving Numerical Solution of the Problem with Partioned Coupling LGS; Sff: vpm*n; Spm: pff LGS_solved_cp, runtime_cp Solver (UMFPACK, PD-GMRS, Bi-CGSTAB), Preconditioner (Uzawa, AMG), Coupling (preCICE, Picard iteration; inverse least-squares interface quasi-Newton) DuMux, preCICE, DUNE Numerical Mathematics
Monolithic Block-Preconditioning Solving Solving with Preconditioner+Solver LGS LGS_solved_mlbp, runtime_mlbp Solver: PD-GMRES, Preconditioner: AMG, Uzawa, ILU(0), Block-Jacobi, Block-Gauss-Seidel DuMux Numerical Mathematics
Direct Solving Solving with Preconditioner+Solver LGS LGS_solved_direct, runtime_direct Solver: UMFPACK DuMux
Comparison Comparison of the three solution approaches with regard to runtime, scalability and memory requirements runtime_cp, runtime_mlbp, runtime_direct Graph comparison of the runtime, Paper Degrees of Freedom Numerical Mathematics

Applied Methods

ID Name Process Step Parameter implemented by
wikidata:Q7001954 Dirichlet-Neumann coupling Coupling
wikidata:Q1683631 Picard iteration mit fixed-point iteration Coupling
wikidata:Q25098909 inverse least-squares interface quasi-Newton Coupling
wikidata:Q1069090 block-Gauss-Seidel method Preconditioner
wikidata:Q2467290 Umfpack Solver
wikidata:Q56564057 PD-GMRES Solver k (subiteration parameter, determined automatically), tolerance: relative residual...
wikidata:Q56560244 Bi-CGSTAB Solver tolerance: relative residual...
wikidata:Q1471828 AMG method Preconditioner
wikidata: Q17144437 Uzawa-iterations Preconditioner
wikidata:Q1654069 ILU(0) factorization Preconditioner

Software used

ID Name Description Version Programming Language Dependencies versioned Published Documented
sw:8713 preCICE Library for coupling simulations v2104.0 Core library in C++; Bindings for Fortran, Python, C, Matlab; Adaptors dependant on simulation code (Fortran, Python, C, Matlab) Linux, Boost, MPI, ... https://github.com/precice/precice https://doi.org/10.18419/darus-2125 https://precice.org/docs.html
sw:14293 DuMux DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media C++, python-bindings, utility-skripts in python Linux, DuNE (C++ Framework), cmake (module chains), package-config, compiler, build-essentials, dpg https://git.iws.uni-stuttgart.de/dumux-repositories/dumux https://zenodo.org/record/5152939#.YQva944zY2w https://dumux.org/docs/
sw:18749 ISTL Iterative Solver Template Library” (ISTL) which is part of the “Distributed and Unified Numerics Environment” (DUNE). C++ Linux, DuNE (C++ Framework) https://gitlab.dune-project.org/core/dune-istl https://doi.org/10.1007/978-3-540-75755-9_82 https://www.dune-project.org/modules/dune-istl/

Hardware

ID Name Processor Compiler #Nodes #Cores
AMD EPYC 7551P CPU 1 1

Input Data

ID Name Size Data Structure Format Representation Format Exchange Binary/Text Proprietary To Publish To Archive
LGS O(2*106) Matrix size Data structure in DUNE/DuMux numbers open ? ?

Output Data

ID Name Size Data Structure Format Representation Format Exchange Binary/Text Proprietary To Publish To Archive
Runtime comparison of the direct solver Umfpack and iterative solvers with partitioned coupling and block preconditioning small statistics numbers ? ?
Runtime comparison of the best performing solver configurations small statistics numbers ? ?
arxiv:2108.13229 Paper O(KB) pdf text open yes yes

Reproducibility

Mathematical Reproducibility

Yes, by all parameters

Runtime Reproducibility

Yes, for same input samples

Reproducibility of Results

Due to floating point arithmetic, no bitwise reproducibility

Reproducibility on original Hardware

Reproducibility on other Hardware

a) Serial Computation

b) Parallel Computation

Transferability to

a) similar model parameters (other initial and boundary values)

b) other models

Legend

The following abbreviations are used in the document to indicate/resolve IDs:

doi: DOI / https://dx.doi.org/

sw: swMATH / https://swmath.org/software/

wikidata: https://www.wikidata.org/wiki/

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