TreeTools (Q60640): Difference between revisions

← Older edit

@@ Property / last update @@
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+Efficient implementations of functions for the creation,   modification and analysis of phylogenetic trees.  Applications include:  generation of trees with specified shapes;  tree rearrangement;  analysis of tree shape;  rooting of trees and extraction of subtrees;  calculation and depiction of split support;  plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)  <doi:10.1371/journal.pone.0212942>;  calculation of ancestor-descendant relationships,  of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,  and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>;  artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;  import and export of trees from Newick, Nexus (Maddison et al. 1997)  <doi:10.1093/sysbio/46.4.590>,  and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;  and analysis of splits and cladistic information.
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+Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix
+Normal rank
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+Phylogenetic Signal and Bias in Paleontology
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+Normal rank
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+A new balance index for phylogenetic trees
@@ Property / cites work: A new balance index for phylogenetic trees / rank @@
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+Software:60640

Latest revision as of 18:56, 12 March 2024

Create, Modify and Analyse Phylogenetic Trees

Language	Label	Description	Also known as
English	TreeTools	Create, Modify and Analyse Phylogenetic Trees

Statements

software version identifier

1.9.1

publication date

20 March 2023

0 references

1.9.2

publication date

27 April 2023

0 references

0.1.2

publication date

18 December 2019

0 references

0.1.3

publication date

19 December 2019

0 references

0.1.4

publication date

4 March 2020

0 references

1.0.0

publication date

8 June 2020

0 references

1.1.0

publication date

7 July 2020

0 references

1.2.0

publication date

3 August 2020

0 references

1.3.0

publication date

22 September 2020

0 references

1.3.1

publication date

3 October 2020

0 references

1.4.0

publication date

19 October 2020

0 references

1.4.1

publication date

9 December 2020

0 references

1.4.2

publication date

26 January 2021

0 references

1.4.3

publication date

12 April 2021

0 references

1.4.4

publication date

20 April 2021

0 references

1.4.5

publication date

23 June 2021

0 references

1.5.0

publication date

8 September 2021

0 references

1.5.1

publication date

6 October 2021

0 references

1.6.0

publication date

12 January 2022

0 references

1.7.0

publication date

21 March 2022

0 references

1.7.1

publication date

25 March 2022

0 references

1.7.2

publication date

24 May 2022

0 references

1.7.3

publication date

20 July 2022

0 references

1.8.0

publication date

15 September 2022

0 references

1.9.0

publication date

28 November 2022

0 references

1.10.0

publication date

19 August 2023

0 references

0 references

0 references

0 references

19 August 2023

0 references

description

Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; tree rearrangement; analysis of tree shape; rooting of trees and extraction of subtrees; calculation and depiction of split support; plotting the position of rogue taxa (Klopfstein & Spasojevic 2019) <doi:10.1371/journal.pone.0212942>; calculation of ancestor-descendant relationships, of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>, and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>; artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information.

0 references

author

Martin R. Smith

0 references

copyright license

GNU General Public License

edition/version

≥ 3 (English)

0 references

depends on software

R

software version identifier