shinyTempSignal (Q103750): Difference between revisions

← Older edit

@@ description / en / description / en @@
-Explore Temporal Signal of Molecular Phylogenies
+Explore Temporal and Other Phylogenetic Signals
@@ Property / last update @@
-July 2022Timestamp +2022-07-06T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-07-06T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 6 July 2022 / rank @@
-Normal rank
@@ Property / imports @@
-ape
@@ Property / imports: ape / rank @@
-Normal rank
@@ Property / imports @@
-DescTools
@@ Property / imports: DescTools / rank @@
-Normal rank
@@ Property / imports @@
-forecast
@@ Property / imports: forecast / rank @@
-Normal rank
@@ Property / imports @@
-ggpubr
@@ Property / imports: ggpubr / rank @@
-Normal rank
@@ Property / imports @@
-ggtree
@@ Property / imports: ggtree / rank @@
-Normal rank
@@ Property / imports @@
-golem
@@ Property / imports: golem / rank @@
-Normal rank
@@ Property / imports @@
-shiny
@@ Property / imports: shiny / rank @@
-Normal rank
@@ Property / imports @@
-shinydashboard
@@ Property / imports: shinydashboard / rank @@
-Normal rank
@@ Property / imports @@
-shinyjs
@@ Property / imports: shinyjs / rank @@
-Normal rank
@@ Property / imports @@
-stringr
@@ Property / imports: stringr / rank @@
-Normal rank
@@ Property / imports @@
-treeio
@@ Property / imports: treeio / rank @@
-Normal rank
@@ Property / software version identifier @@
+.0.2
@@ Property / software version identifier: 0.0.2 / rank @@
+Normal rank
@@ Property / software version identifier: 0.0.2 / qualifier @@
+publication date: 14 April 2022Timestamp +2022-04-14T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-04-14T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.4
@@ Property / software version identifier: 0.0.4 / rank @@
+Normal rank
@@ Property / software version identifier: 0.0.4 / qualifier @@
+publication date: 26 November 2023Timestamp +2023-11-26T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-26T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.5
@@ Property / software version identifier: 0.0.5 / rank @@
+Normal rank
@@ Property / software version identifier: 0.0.5 / qualifier @@
+publication date: 12 December 2023Timestamp +2023-12-12T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-12-12T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.6
@@ Property / software version identifier: 0.0.6 / rank @@
+Normal rank
@@ Property / software version identifier: 0.0.6 / qualifier @@
+publication date: 22 January 2024Timestamp +2024-01-22T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2024-01-22T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.7
@@ Property / software version identifier: 0.0.7 / rank @@
+Normal rank
@@ Property / software version identifier: 0.0.7 / qualifier @@
+publication date: 21 February 2024Timestamp +2024-02-21T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2024-02-21T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update @@
+February 2024Timestamp +2024-02-21T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2024-02-21T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 21 February 2024 / rank @@
+Normal rank
@@ Property / author @@
+Guangchuang Yu
@@ Property / author: Guangchuang Yu / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / imports @@
+ape
@@ Property / imports: ape / rank @@
+Normal rank
@@ Property / imports @@
+forecast
@@ Property / imports: forecast / rank @@
+Normal rank
@@ Property / imports @@
+ggplot2
@@ Property / imports: ggplot2 / rank @@
+Normal rank
@@ Property / imports @@
+ggprism
@@ Property / imports: ggprism / rank @@
+Normal rank
@@ Property / imports @@
+ggpmisc
@@ Property / imports: ggpmisc / rank @@
+Normal rank
@@ Property / imports @@
+ggtree
@@ Property / imports: ggtree / rank @@
+Normal rank
@@ Property / imports @@
+golem
@@ Property / imports: golem / rank @@
+Normal rank
@@ Property / imports: golem / qualifier @@
+software version identifier: ≥ 0.3.1
@@ Property / imports @@
+shiny
@@ Property / imports: shiny / rank @@
+Normal rank
@@ Property / imports: shiny / qualifier @@
+software version identifier: ≥ 1.6.0
@@ Property / imports @@
+shinydashboard
@@ Property / imports: shinydashboard / rank @@
+Normal rank
@@ Property / imports @@
+shinyjs
@@ Property / imports: shinyjs / rank @@
+Normal rank
@@ Property / imports @@
+shinyWidgets
@@ Property / imports: shinyWidgets / rank @@
+Normal rank
@@ Property / imports @@
+stats
@@ Property / imports: stats / rank @@
+Normal rank
@@ Property / imports @@
+treeio
@@ Property / imports: treeio / rank @@
+Normal rank
@@ Property / imports @@
+yulab.utils
@@ Property / imports: yulab.utils / rank @@
+Normal rank
@@ Property / imports: yulab.utils / qualifier @@
+software version identifier: ≥ 0.1.4
@@ Property / imports @@
+nlme
@@ Property / imports: nlme / rank @@
+Normal rank
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 3.3.0
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ Property / description @@
+Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:103750

Latest revision as of 07:50, 19 April 2024

Explore Temporal and Other Phylogenetic Signals

Language	Label	Description	Also known as
English	shinyTempSignal	Explore Temporal and Other Phylogenetic Signals

Statements

instance of

R package

0 references

software version identifier

0.0.3

publication date

6 July 2022

0 references

0.0.2

publication date

14 April 2022

0 references

0.0.4

publication date

26 November 2023

0 references

0.0.5

publication date

12 December 2023

0 references

0.0.6

publication date

22 January 2024

0 references

0.0.7

publication date

21 February 2024

0 references

0 references

0 references

21 February 2024

0 references

author

Guangchuang Yu

0 references

copyright license

GNU General Public License, version 3.0

0 references

0 references

0 references

0 references

0 references

0 references

0 references

software version identifier

≥ 0.3.1

0 references

shiny

software version identifier

≥ 1.6.0

0 references

0 references

0 references

0 references

0 references

0 references

software version identifier

≥ 0.1.4

0 references

nlme

0 references

depends on software

R

software version identifier

≥ 3.3.0

0 references

MaRDI profile type

MaRDI software profile

0 references

description

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.

0 references

Identifiers

CRAN project

shinyTempSignal

0 references

Sitelinks

Mathematics(1 entry)

mardi Software:103750