epiomics (Q58005): Difference between revisions
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Property / last update: 15 March 2023 / rank | |||||||||||||||
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0.0.1 | |||||||||||||||
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publication date: 9 January 2023
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1.1.0 | |||||||||||||||
Property / software version identifier: 1.1.0 / rank | |||||||||||||||
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Property / software version identifier: 1.1.0 / qualifier | |||||||||||||||
publication date: 26 February 2024
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26 February 2024
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Property / last update: 26 February 2024 / rank | |||||||||||||||
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A collection of fast and flexible functions for analyzing omics data in observational studies. Multiple different approaches for integrating multiple environmental/genetic factors, omics data, and/or phenotype data are implemented. This includes functions for performing omics wide association studies with one or more variables of interest as the exposure or outcome; a function for performing a meet in the middle analysis for linking exposures, omics, and outcomes (as described by Chadeau-Hyam et al., (2010) <doi:10.3109/1354750X.2010.533285>); and a function for performing a mixtures analysis across all omics features using quantile-based g-Computation (as described by Keil et al., (2019) <doi:10.1289/EHP5838>). | |||||||||||||||
Property / description: A collection of fast and flexible functions for analyzing omics data in observational studies. Multiple different approaches for integrating multiple environmental/genetic factors, omics data, and/or phenotype data are implemented. This includes functions for performing omics wide association studies with one or more variables of interest as the exposure or outcome; a function for performing a meet in the middle analysis for linking exposures, omics, and outcomes (as described by Chadeau-Hyam et al., (2010) <doi:10.3109/1354750X.2010.533285>); and a function for performing a mixtures analysis across all omics features using quantile-based g-Computation (as described by Keil et al., (2019) <doi:10.1289/EHP5838>). / rank | |||||||||||||||
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Property / author: Jesse A Goodrich / rank | |||||||||||||||
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Property / copyright license: GNU General Public License / rank | |||||||||||||||
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Property / copyright license: GNU General Public License / qualifier | |||||||||||||||
edition/version: ≥ 3 (English) | |||||||||||||||
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Property / imports: data.table / rank | |||||||||||||||
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Property / imports: ggplot2 / rank | |||||||||||||||
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Property / imports: ggrepel / rank | |||||||||||||||
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Property / imports: qgcomp / rank | |||||||||||||||
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Property / imports: survival / rank | |||||||||||||||
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Property / cites work: Meeting-in-the-middle using metabolic profiling – a strategy for the identification of intermediate biomarkers in cohort studies / rank | |||||||||||||||
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Property / cites work: A Quantile-Based g-Computation Approach to Addressing the Effects of Exposure Mixtures / rank | |||||||||||||||
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Property / depends on software: R / rank | |||||||||||||||
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Property / depends on software: R / qualifier | |||||||||||||||
software version identifier: ≥ 3.5.0 | |||||||||||||||
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Property / MaRDI profile type: MaRDI software profile / rank | |||||||||||||||
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links / mardi / name | links / mardi / name | ||||||||||||||
Latest revision as of 18:55, 12 March 2024
Analysis of Omics Data in Observational Studies
Language | Label | Description | Also known as |
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English | epiomics |
Analysis of Omics Data in Observational Studies |
Statements
26 February 2024
0 references
A collection of fast and flexible functions for analyzing omics data in observational studies. Multiple different approaches for integrating multiple environmental/genetic factors, omics data, and/or phenotype data are implemented. This includes functions for performing omics wide association studies with one or more variables of interest as the exposure or outcome; a function for performing a meet in the middle analysis for linking exposures, omics, and outcomes (as described by Chadeau-Hyam et al., (2010) <doi:10.3109/1354750X.2010.533285>); and a function for performing a mixtures analysis across all omics features using quantile-based g-Computation (as described by Keil et al., (2019) <doi:10.1289/EHP5838>).
0 references