convertid (Q121688): Difference between revisions
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Removed claim: copyright license (P163): GNU General Public License, version 3.0 (Q56621) |
Added link to MaRDI item. |
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publication date: 21 August 2021
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publication date: 2 September 2021
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publication date: 5 October 2023
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publication date: 6 October 2023
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publication date: 4 November 2023
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publication date: 29 November 2023
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29 November 2023
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Property / last update: 29 November 2023 / rank | |||||||||||||||
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Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol. | |||||||||||||||
Property / description: Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol. / rank | |||||||||||||||
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Property / author: Vidal Fey / rank | |||||||||||||||
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Property / author: Henrik Edgren / rank | |||||||||||||||
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Property / depends on software: AnnotationDbi / rank | |||||||||||||||
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links / mardi / name | links / mardi / name | ||||||||||||||
Latest revision as of 19:56, 12 March 2024
Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
Language | Label | Description | Also known as |
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English | convertid |
Convert Gene IDs Between Each Other and Fetch Annotations from Biomart |
Statements
29 November 2023
0 references
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.
0 references