SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins (Q1734238): Difference between revisions

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scientific article

Language	Label	Description	Also known as
English	SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins	scientific article

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scholarly article

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title

SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins (English)

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Journal of Theoretical Biology

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publication date

27 March 2019

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zbMATH Keywords

S-prenylation

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S-prenyl cysteine

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PseAAC

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5-step rule

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statistical moments

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prediction

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describes a project that uses

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MaRDI publication profile

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full work available at URL

https://doi.org/10.1016/j.jtbi.2019.02.007

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cites work

iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences

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IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition

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Some remarks on protein attribute prediction and pseudo amino acid composition

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pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC

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Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC

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Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC

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Naïve Bayes classifier with feature selection to identify phage virion proteins

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pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach

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iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC

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pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments

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Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine

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Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence

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Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition

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Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction

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Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition

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Predicting protein submitochondrial locations by incorporating the pseudo-position specific scoring matrix into the general Chou's pseudo-amino acid composition

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Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC

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Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC

0 references

BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC

0 references

Fu-SulfPred: identification of protein S-sulfenylation sites by fusing forests via Chou's general PseAAC

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\textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

0 references

Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC

0 references

Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC

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Identifiers

zbMATH Open document ID

1411.92233

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DOI

10.1016/j.jtbi.2019.02.007

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Mathematics Subject Classification ID

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Sitelinks

Mathematics(1 entry)

mardi Publication:1734238

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@@ Property / describes a project that uses: iHyd-PseCp / rank @@
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+iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
+Normal rank
@@ Property / cites work @@
+IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
+Normal rank
@@ Property / cites work @@
+Some remarks on protein attribute prediction and pseudo amino acid composition
+Normal rank
@@ Property / cites work @@
+pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
+Normal rank
@@ Property / cites work @@
+Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC
+Normal rank
@@ Property / cites work @@
+Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
+Normal rank
@@ Property / cites work @@
+Naïve Bayes classifier with feature selection to identify phage virion proteins
+Normal rank
@@ Property / cites work @@
+pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
+Normal rank
@@ Property / cites work @@
+iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
+Normal rank
@@ Property / cites work @@
+pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments
+Normal rank
@@ Property / cites work @@
+Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
+Normal rank
@@ Property / cites work @@
+Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence
+Normal rank
@@ Property / cites work @@
+Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition
+Normal rank
@@ Property / cites work @@
+Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
+Normal rank
@@ Property / cites work @@
+Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
+Normal rank
@@ Property / cites work @@
+Predicting protein submitochondrial locations by incorporating the pseudo-position specific scoring matrix into the general Chou's pseudo-amino acid composition
+Normal rank
@@ Property / cites work @@
+Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC
+Normal rank
@@ Property / cites work @@
+Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC
+Normal rank
@@ Property / cites work @@
+BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC
+Normal rank
@@ Property / cites work @@
+Fu-SulfPred: identification of protein S-sulfenylation sites by fusing forests via Chou's general PseAAC
+Normal rank
@@ Property / cites work @@
+\textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
+Normal rank
@@ Property / cites work @@
+Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC
+Normal rank
@@ Property / cites work @@
+Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC
+Normal rank