nanostringr (Q99583): Difference between revisions
From MaRDI portal
Removed claim: depends on software (P342): R (Q13519) |
Added link to MaRDI item. |
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Property / last update: 20 August 2022 / rank | |||||||||||||||
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Property / cites work: Single-Patient Molecular Testing with NanoString nCounter Data Using a Reference-Based Strategy for Batch Effect Correction / rank | |||||||||||||||
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publication date: 15 March 2019
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publication date: 25 March 2019
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publication date: 3 April 2019
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publication date: 24 April 2019
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publication date: 9 May 2019
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publication date: 6 February 2021
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publication date: 25 May 2022
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publication date: 15 August 2023
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15 August 2023
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Property / last update: 15 August 2023 / rank | |||||||||||||||
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Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files. | |||||||||||||||
Property / description: Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files. / rank | |||||||||||||||
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Property / author: Derek Chiu / rank | |||||||||||||||
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Property / author: Aline Talhouk / rank | |||||||||||||||
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Property / author: Samuel Leung / rank | |||||||||||||||
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software version identifier: ≥ 3.5.0 | |||||||||||||||
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Property / cites work: Single-Patient Molecular Testing with NanoString nCounter Data Using a Reference-Based Strategy for Batch Effect Correction / rank | |||||||||||||||
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Property / MaRDI profile type: MaRDI software profile / rank | |||||||||||||||
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links / mardi / name | links / mardi / name | ||||||||||||||
Latest revision as of 19:56, 12 March 2024
Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data
Language | Label | Description | Also known as |
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English | nanostringr |
Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data |
Statements
15 August 2023
0 references
Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
0 references