scapGNN (Q86585): Difference between revisions
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Removed claim: cites work (P223): The Graph Neural Network Model (Q86581) |
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Property / last update: 2 December 2022 / rank | |||||||||||||||
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Property / cites work: Semi-Supervised Classification with Graph Convolutional Networks / rank | |||||||||||||||
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publication date: 10 June 2022
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publication date: 27 June 2022
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publication date: 23 November 2022
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publication date: 8 August 2023
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8 August 2023
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It is a single cell active pathway analysis tool based on the graph neural network (F. Scarselli (2009) <doi:10.1109/TNN.2008.2005605>; Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell association network, infer pathway activity scores from different single cell modalities data, integrate multiple modality data on the same cells into one pathway activity score matrix, identify cell phenotype activated gene modules and parse association networks of gene modules under multiple cell phenotype. In addition, abundant visualization programs are provided to display the results. | |||||||||||||||
Property / description: It is a single cell active pathway analysis tool based on the graph neural network (F. Scarselli (2009) <doi:10.1109/TNN.2008.2005605>; Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell association network, infer pathway activity scores from different single cell modalities data, integrate multiple modality data on the same cells into one pathway activity score matrix, identify cell phenotype activated gene modules and parse association networks of gene modules under multiple cell phenotype. In addition, abundant visualization programs are provided to display the results. / rank | |||||||||||||||
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Property / author: Xudong Han / rank | |||||||||||||||
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Property / copyright license: GNU General Public License, version 2.0 / rank | |||||||||||||||
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software version identifier: ≥ 4.1.0 | |||||||||||||||
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Property / imports: ActivePathways / rank | |||||||||||||||
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Property / cites work: The Graph Neural Network Model / rank | |||||||||||||||
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Property / cites work: Semi-Supervised Classification with Graph Convolutional Networks / rank | |||||||||||||||
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Property / MaRDI profile type: MaRDI software profile / rank | |||||||||||||||
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Latest revision as of 19:56, 12 March 2024
Graph Neural Network-Based Framework for Single Cell Active Pathways and Gene Modules Analysis
Language | Label | Description | Also known as |
---|---|---|---|
English | scapGNN |
Graph Neural Network-Based Framework for Single Cell Active Pathways and Gene Modules Analysis |
Statements
8 August 2023
0 references
It is a single cell active pathway analysis tool based on the graph neural network (F. Scarselli (2009) <doi:10.1109/TNN.2008.2005605>; Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell association network, infer pathway activity scores from different single cell modalities data, integrate multiple modality data on the same cells into one pathway activity score matrix, identify cell phenotype activated gene modules and parse association networks of gene modules under multiple cell phenotype. In addition, abundant visualization programs are provided to display the results.
0 references
expanded from: GPL (≥ 2) (English)
0 references