spOccupancy (Q56303): Difference between revisions
From MaRDI portal
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publication date: 11 November 2021
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publication date: 25 November 2021
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publication date: 19 December 2021
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publication date: 7 January 2022
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publication date: 29 March 2022
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publication date: 13 April 2022
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publication date: 22 May 2022
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publication date: 13 July 2022
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publication date: 16 November 2022
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publication date: 8 December 2022
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publication date: 21 December 2022
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publication date: 3 March 2023
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publication date: 16 August 2023
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publication date: 1 September 2023
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publication date: 1 November 2023
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1 November 2023
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Property / last update: 1 November 2023 / rank | |||||||||||||||
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Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively. | |||||||||||||||
Property / description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively. / rank | |||||||||||||||
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Property / author: Jeffrey Doser / rank | |||||||||||||||
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Property / author: Andrew O. Finley / rank | |||||||||||||||
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Property / copyright license: GNU General Public License / rank | |||||||||||||||
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Property / copyright license: GNU General Public License / qualifier | |||||||||||||||
edition/version: ≥ 3 (English) | |||||||||||||||
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software version identifier: ≥ 3.5.0 | |||||||||||||||
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Property / cites work: Bayesian Inference for Logistic Models Using Pólya–Gamma Latent Variables / rank | |||||||||||||||
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Property / cites work: Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets / rank | |||||||||||||||
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Property / cites work: The recent past and promising future for data integration methods to estimate species’ distributions / rank | |||||||||||||||
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Property / cites work: ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE / rank | |||||||||||||||
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Property / cites work: Estimating Size and Composition of Biological Communities by Modeling the Occurrence of Species / rank | |||||||||||||||
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Property / cites work: spNNGP R package for Nearest Neighbor Gaussian Process models / rank | |||||||||||||||
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Revision as of 17:12, 29 February 2024
Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Language | Label | Description | Also known as |
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English | spOccupancy |
Single-Species, Multi-Species, and Integrated Spatial Occupancy Models |
Statements
1 November 2023
0 references
Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
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