Project:LitReview

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Common Literature and Technology Review by Task Area 5

  • This file contains initial thoughts for a common literature review by the MaRDI Portal team.
  • Grober Zeitplan: Einreichen im Herbst (Oktober)
  • Mögliches Journal: ACM Computing Surveys -> https://dl.acm.org/journal/csur

Tasks

  • Tim: "Medizinischen" Review an alle schicken
  • Moritz: "How to write a literature review" an alle schicken
  • Tim/Moritz: Definieren, wie im Zotero "getaggt" werden soll (zB sowas wie "RELEVANCE::HIGH", "TECHNOLOGY::STORAGE")
  • Pro Woche ca. 5h die folgenden Aufgaben bearbeiten:
  • Welche Reviews gibt es zum Thema schon? (Dann: Delta zu unserer Frage definieren)
  • Grobe Liste von "den üblichen Verdächtigen" erstellen
    • "Reverse Search": ausgehend von zB re3data.org , welche Portal-Systeme gibt es und welche Technologie setzen die ein?
  • Zusammentragen "aller möglichen" Systeme bzw. Paper und Zusammenführen im Zotero
  • Systematisieren der Query und Auswahl der Suchmaschinen(n) (bzw. sowas wie World of Science)

Research Question

(to be refined, add your thoughts)

  • Topics: Portal Services, Storage Services
    • Beispiele: https://www.re3data.org/ , https://www.openaire.eu/
  • Noch offen: Welche Richtung soll gewählt werden?
    • "Klassischer" Literature Review
    • Aus einem Literature Review die "bekanntesten" / "am weitesten verbreiteten" Systeme extragieren und jeweils beschreiben
  • Welche Projekte oder Ansätze gibt es, um wissenschaftliche Forschungsdaten unter den FAIR Prinzipien zur Verfügung zu stellen?
    • Thematisch einzelne Komponenten extrahieren (z. B. Formelsuche, Datenimports, Knowledge Graph)
    • Wie ist Performance dieser Projekte und der Komponenten? Was sind Pros, Cons ? Was ist deren Fragestellung? Wie war der Aufwand zur Erstellung?
    • Inwieweit werden die FAIR Prinzipien von den Projekten umgesetzt?
    • Wenn möglich, nur Open Access berücksichtigen
  • Inwieweit sind Portal und Infrastrukturlösungen für Mathematische Anwender anwendbar. Prüfen ob

Process 📑

(Events etc for the creation of Review Document)

  1. Sammeln von Informationen bis ca. 20.04.22. in diesem Markdown Sheet
    1. Papers relevant über ~ Pubmed oder IEEE anfragen finden, Queries formulieren, um Paper abzufragen, ~11.04-15.04
    2. Forschungsfrage ausdefinieren
    3. Relevante Ideen sammeln in diesem Dokument
  2. Kurze Besprechung 20.04.22 zum aktuellen Stand
  3. Besprechung der Forschungspläne im Rahmen der MMS Days, am Di oder Mittwoch
    1. Vorschlag ZIB am Mittwoch 27.04.22 Nachmittag
  4. Research in etwa 4 Stunden&Woche anlegen.
  5. Research block im Weekly, aus dem Weekly heraus extended Termine veranstalten
  6. Gemeinsame Publikation

Platforms

platforms that might be interesting

  • STRENDA DB
  • nanohub

Literature search

Paper search engines

https://scholar.google.com

https://pubmed.ncbi.nlm.nih.gov

https://ieeexplore.ieee.org/

webofscience/publons ?

zbMATH Open (for everything math related)

www.science.gov (for infrastructure related)

...

Queries

  • "scientific AND/OR research data platform [FAIR]": DN IMPORTED https://scholar.google.de/scholar?hl=de&as\_sdt=0%2C5&q=+scientific+data+platform+FAIR&btnG= IMPORTED https://scholar.google.de/scholar?hl=de&as\_sdt=0%2C5&q=+research+data+platform+FAIR&btnG= https://scholar.google.de/scholar?hl=de&as\_sdt=0%2C5&q=+research+data+platform&btnG= https://scholar.google.de/scholar?hl=de&as\_sdt=0%2C5&q=+scientific+data+platform&btnG= https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=scientific data platform https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=scientific data platform FAIR https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=research data platform https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=research data platform FAIR https://pubmed.ncbi.nlm.nih.gov/?term=research+data+platform https://pubmed.ncbi.nlm.nih.gov/?term=research+data+platform+fair https://pubmed.ncbi.nlm.nih.gov/?term=scientific+data+platform https://pubmed.ncbi.nlm.nih.gov/?term=scientific+data+platform+fair
  • "FAIR research data services": DN https://scholar.google.de/scholar?hl=de&as\_sdt=0%2C5&q=FAIR+research+data+services&btnG= https://pubmed.ncbi.nlm.nih.gov/?term=FAIR+data+research+services https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=FAIR research data services
  • "scientific data repository FAIR": DN https://scholar.google.com/scholar?hl=de&as\_sdt=7%2C39&q=scientific+data+repository+FAIR&btnG=
    • (-> https://archive-ouverte.unige.ch/unige:152005)
  • Scientific metadata standards: EF
    • https://scholar.google.es/scholar?hl=de&as\_sdt=0%2C5&q=scientific+metadata+standards&btnG=
  • Scientific metadata FAIR: EF
    • https://scholar.google.es/scholar?hl=de&as\_sdt=0%2C5&q=scientific+metadata+FAIR&btnG=
  • Research metadata standards: EF
    • https://scholar.google.es/scholar?hl=de&as\_sdt=0%2C5&q=research+metadata+standards&btnG=
  • Scientific metadata platform: EF
    • https://scholar.google.es/scholar?hl=de&as\_sdt=0%2C5&q=scientific+metadata+platform&btnG=
  • Scientific metadata framework: EF
    • https://scholar.google.es/scholar?hl=de&as\_sdt=0%2C5&q=research+metadata+framework&btnG=
  • "fair wiki data": LP
    • https://pubmed.ncbi.nlm.nih.gov/?termhttps://www.zotero.org/support/duplicate\_detection=fair+wiki+data&sort=pubdate
    • https://scholar.google.co10.1089/aivt.2021.0010.m/scholar?hl=de&as_sdt=0%2C5&q=fair+wiki+data&btnG=
  • "digital research infrastructure": JS
    • https://scholar.google.de/scholar?hl=de&as\_sdt=0%2C5&q=digital++research+infrastructure&btnG= - zotero done (4p)
    • https://pubmed.ncbi.nlm.nih.gov/?term=digital+research+infrastructure - zotero done (4p), not much here
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=digital research infrastructure - zotero done (2p)
    • www.science.gov - zotero done (3p)
    • possible follow up keywords: "digital research intrastructure literature review"
    • possible categorizations: "infrastruture criteria, infrastructure implementations, additional technologies"
  • "research software infrastructure": JS
    • https://scholar.google.de/scholar?hl=en&as\_sdt=0%2C5&as\_vis=1&q=research+software+infrastructure&btnG= -zotero done (3p)
    • https://pubmed.ncbi.nlm.nih.gov/?term=research+software+infrastructure - zotero done (3p)
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=research software infrastructure (3p)
    • possible categorizations: infrastructure criteria, distributed computing
    • comment: many results here more are more about software engineering practices, no follow up keywords
  • "research data infrastructure": JS
    • https://scholar.google.de/scholar?hl=en&as\_sdt=0%2C5&as\_vis=1&q=research+data+infrastructure&btnG= - zotero done (4p)
    • https://pubmed.ncbi.nlm.nih.gov/?term=research+data+infrastructure - zotero done (3p)
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=research data infrastructure (done)
    • possible categorizations: infrastructure criteria, infrastructure realization, legal
    • comment: many entries seem to be about spatial data (geodaten) which is not relevant specific case
    • follow up search tems: "(mathematical/physics/~mint) research data infrastructure" to narrow down infrastructure holding similar data, "legal considerations research data"
  • "distributed research data infrastructure": JS
    • https://scholar.google.de/scholar?q=distributed+research+data+infrastructure&hl=en&as\_sdt=0&as\_vis=1&oi=scholart - zotero (4p)
    • https://pubmed.ncbi.nlm.nih.gov/?term=distributed+research+data+infrastructure - zotero (3p)
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=distributed research data infrastructure - zotero (4p)
    • comment: mostly redundant to previous keywords or irrelevant content, idea neo4j with wikidata /wikibase import for distributed data storage
  • "research data infrastructure AND linked open data": JS
    • https://scholar.google.de/scholar?hl=en&as\_sdt=0%2C5&as\_vis=1&q=research+data+infrastructure+AND+linked+open+data&btnG= - zotero (4p)
    • https://pubmed.ncbi.nlm.nih.gov/?term=research+data+infrastructure+AND+linked+open+data - zotero (4p)
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=research data infrastructure AND linked open data (4p)
  • "federated research data infrastructure": JS
    • https://scholar.google.de/scholar?hl=en&as\_sdt=0%2C5&as\_vis=1&q=federated+research+data+infrastructure&btnG= -zotero (4p)
    • https://pubmed.ncbi.nlm.nih.gov/?term=federated+research+data+infrastructure - zotero (3p)
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=federated research data infrastructure - zotero (4p)
  • "research data knowledge graph": LP
    • https://scholar.google.de/scholar?hl=en&as\_sdt=0%2C5&as\_vis=1&q=research+data+knowledge+graph&btnG=
    • https://pubmed.ncbi.nlm.nih.gov/?term=research+data+knowledge+graph
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=federated research data infrastructure
  • "research data ontology": LP
    • https://scholar.google.de/scholar?hl=en&as\_sdt=0%2C5&as\_vis=1&q=research+data+ontology&btnG=
    • https://pubmed.ncbi.nlm.nih.gov/?term=research+data+ontology
    • https://ieeexplore.ieee.org/search/searchresult.jsp?newsearch=true&queryText=research data ontology
  • "FAIR Princples for Research Data Infrastructure"
    • (one or two paper which define the FAIR principles in research data context for evaluation)

Some articles (found with standard googlesearch)

  • "research data portal"
    • https://docs.globus.org/modern-dataresearch-data-portal/ contains examples with portals
    • https://www.datenportal.bmbf.de/portal/en/index.html is a concrete example
    • https://uni-tuebingen.de/forschung/forschungsinfrastruktur/escience-center/projekte/open-research-data-portal/
  • "federated research data portal"
    • https://www.re3data.org/repository/r3d100012646
  • Digital Research Infrastructure
    • DARIAH: https://www.dariah.eu/
    • ARIADNE: Advanced research infrastructures for archaeological dataset networking in Europe
    • CLARIN
    • CLARIAH
    • PARTHENOS: https://www.parthenos-project.eu/

Next Draft:

Idea collection what is next.

  • Extract results -> systematisch irgendwo notieren, David schaut an was geeignet ist
    • Jabref
    • Zotero <---
    • Citavi
    • Mendeley
  • Store results (maybe with result form),
    • collect PDFs to relevant papers in cloud ?
      • do all people have access to journals etc ? is it possible from zib vpn,
        • ist möglich aber unter umständen nicht alles verfügbar in ZIB
        • DKEG ~~
    • define key for each paper Key: "Ferrer2022.3" can also be autodefined by tools
  • Assign persons to list entries
  • Get relevant papers which are relevant and store them in our collaboration tool.
  • categorize results:
    • Form:
      • Content: This paper has content about formulasearch in MediaWiki it is relevant because of Tree Indexing.
      • Relevant Keyword:
      • Description:
  • interpret results

Next Steps as of 21.04.22:

- Tool recherche finden eines geegnetn Bibliotheksverwaltungstools, David

- Alle sobald tool definiert und Zugang da, Anfragen durchschauen und ~Bibtex im Tool einfügen zu relevanten Papern

  • längere Zukunft über nächste Woche hinaus: "wie werden Paper notizen gesammelt ?"
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