immunarch (Q85005)

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Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
Language Label Description Also known as
English
immunarch
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

    Statements

    instance of
    R package
    0 references
    programmed in
    R
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    last update
    15 December 2022
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    software version identifier
    0.9.0
    publication date
    15 December 2022
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    author
    Vadim I. Nazarov
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    Vasily O. Tsvetkov
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    Eugene Rumynskiy
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    Aleksandr A. Popov
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    Ivan Balashov
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    Maria Samokhina
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    depends on software
    R
    software version identifier
    ≥ 4.0.0
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    ggplot2
    software version identifier
    ≥ 3.1.0
    0 references
    dplyr
    software version identifier
    ≥ 0.8.0
    0 references
    dtplyr
    software version identifier
    ≥ 1.0.0
    0 references
    data.table
    software version identifier
    ≥ 1.12.6
    0 references
    patchwork
    0 references
    imports
    factoextra
    software version identifier
    ≥ 1.0.4
    0 references
    fpc
    0 references
    UpSetR
    software version identifier
    ≥ 1.4.0
    0 references
    pheatmap
    software version identifier
    ≥ 1.0.12
    0 references
    ggrepel
    software version identifier
    ≥ 0.8.0
    0 references
    reshape2
    software version identifier
    ≥ 1.4.2
    0 references
    circlize
    0 references
    MASS
    software version identifier
    ≥ 7.3
    0 references
    Rtsne
    software version identifier
    ≥ 0.15
    0 references
    readxl
    software version identifier
    ≥ 1.3.1
    0 references
    shiny
    software version identifier
    ≥ 1.4.0
    0 references
    shinythemes
    0 references
    airr
    0 references
    ggseqlogo
    0 references
    ggalluvial
    software version identifier
    ≥ 0.10.0
    0 references
    Rcpp
    software version identifier
    ≥ 1.0
    0 references
    magrittr
    0 references
    methods
    0 references
    scales
    0 references
    ggpubr
    software version identifier
    ≥ 0.2
    0 references
    rlang
    software version identifier
    ≥ 0.4
    0 references
    plyr
    0 references
    purrr
    0 references
    stringdist
    0 references
    jsonlite
    0 references
    readr
    0 references
    stringr
    0 references
    tibble
    0 references
    tidyselect
    0 references
    tidyr
    0 references
    igraph
    0 references
    ape
    0 references
    doParallel
    0 references
    rlist
    0 references
    utils
    0 references
    glue
    0 references
    phangorn
    0 references
    uuid
    0 references
    stringi
    0 references
    ggraph
    0 references

    Identifiers

    CRAN project
    immunarch
    0 references
     
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