rMVP (Q127748)

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Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool
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rMVP
Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

    Statements

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    1.0.6
    18 April 2021
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    0.99.15
    30 August 2019
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    0.99.16
    24 September 2019
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    0.99.17
    18 October 2019
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    0.99.18
    19 March 2020
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    1.0.0
    7 May 2020
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    1.0.3
    17 July 2020
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    1.0.4
    1 September 2020
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    1.0.5
    2 March 2021
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    1.0.7
    1 September 2023
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    1.0.8
    27 November 2023
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    27 November 2023
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    A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can (1) effectively process large data, (2) rapidly evaluate population structure, (3) efficiently estimate variance components several algorithms, (4) implement parallel-accelerated association tests of markers three methods, (5) globally efficient design on GWAS process computing, (6) enhance visualization of related information. 'rMVP' contains three models GLM (Alkes Price (2006) <doi:10.1038/ng1847>), MLM (Jianming Yu (2006) <doi:10.1038/ng1702>) and FarmCPU (Xiaolei Liu (2016) <doi:10.1371/journal.pgen.1005767>); variance components estimation methods EMMAX (Hyunmin Kang (2008) <doi:10.1534/genetics.107.080101>;), FaSTLMM (method: Christoph Lippert (2011) <doi:10.1038/nmeth.1681>, R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) <doi:10.1371/journal.pone.0107684> and 'SUPER': Qishan Wang and Feng Tian (2014) <doi:10.1371/journal.pone.0107684>), and HE regression (Xiang Zhou (2017) <doi:10.1214/17-AOAS1052>).
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