Two- and three-dimensional Poisson--Nernst--Planck simulations of current flow through gramicidin A

DOI10.1023/A:1013203223798zbMath0997.78004MaRDI QIDQ5960020

Duan-Pin Chen, Uwe Hollerbach, Robert S. Eisenberg

Publication date: 11 April 2002

Published in: Journal of Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1023/a:1013203223798

zbMATH Keywords

simulation; finite element method; spectral element method; equations; gramicidin A; Poisson-Nernst-Planck

Mathematics Subject Classification ID

92C40: Biochemistry, molecular biology

78M10: Finite element, Galerkin and related methods applied to problems in optics and electromagnetic theory

82D37: Statistical mechanics of semiconductors

78A35: Motion of charged particles

Related Items

Mathematical analysis of Poisson–Nernst–Planck models with permanent charges and boundary layers: studies on individual fluxes, Reversal Potential and Reversal Permanent Charge With Unequal Diffusion Coefficients via Classical Poisson--Nernst--Planck Models, An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions, Reversal permanent charge and concentrations in ionic flows via Poisson-Nernst-Planck models, Asymptotic models for transport in large aspect ratio nanopores, Finite Domain Effects in Steady State Solutions of Poisson--Nernst--Planck Equations, Modeling and simulating asymmetrical conductance changes in gramicidin pores, Modeling and simulating asymmetrical conductance changes in gramicidin pores, Error analysis of finite element method for Poisson-Nernst-Planck equations, Finite ion size effects on ionic flows via Poisson-Nernst-Planck systems: higher order contributions, Stabilized finite element methods to simulate the conductances of ion channels, Qualitative properties of ionic flows via Poisson-Nernst-Planck systems with Bikerman's local hard-sphere potential: ion size effects, A new Poisson-Nernst-Planck model with ion-water interactions for charge transport in ion channels, Second-order Poisson-Nernst-Planck solver for ion transport, The immersed boundary method for advection-electrodiffusion with implicit timestepping and local mesh refinement, Non-localness of excess potentials and boundary value problems of Poisson-Nernst-Planck systems for ionic flow: a case study, Geometric singular approach to Poisson-Nernst-Planck models with excess chemical potentials: ion size effects on individual fluxes, Ion size effects on individual fluxes via Poisson-Nernst-Planck systems with Bikerman's local hard-sphere potential: analysis without electroneutrality boundary conditions, Fractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithms, Poisson-Nernst-Planck systems for ion flow with density functional theory for hard-sphere potential: I-V relations and critical potentials. I: Analysis, Poisson-Nernst-Planck systems for ion flow with density functional theory for hard-sphere potential: I-V relations and critical potentials. II: Numerics, Dynamics of ionic flows via Poisson-Nernst-Planck systems with local hard-sphere potentials: competition between cations, Discontinuous bubble immersed finite element method for Poisson-Boltzmann-Nernst-Planck model, Adaptive finite element approximation for steady-state Poisson-Nernst-Planck equations, A virtual element method for the steady-state Poisson-Nernst-Planck equations on polygonal meshes, Mathematical studies of Poisson-Nernst-Planck model for membrane channels: finite ion size effects without electroneutrality boundary conditions, One-dimensional steady-state Poisson-Nernst-Planck systems for ion channels with multiple ion species