Two- and three-dimensional Poisson--Nernst--Planck simulations of current flow through gramicidin A

DOI10.1023/A:1013203223798zbMath0997.78004OpenAlexW1521219187MaRDI QIDQ5960020

Duan-Pin Chen, Uwe Hollerbach, Robert S. Eisenberg

Publication date: 11 April 2002

Published in: Journal of Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1023/a:1013203223798

zbMATH Keywords

simulationfinite element methodspectral element methodequationsgramicidin APoisson-Nernst-Planck

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Finite element, Galerkin and related methods applied to problems in optics and electromagnetic theory (78M10) Statistical mechanics of semiconductors (82D37) Motion of charged particles (78A35)

Related Items (27)

Discontinuous bubble immersed finite element method for Poisson-Boltzmann-Nernst-Planck model ⋮ Stabilized finite element methods to simulate the conductances of ion channels ⋮ One-dimensional steady-state Poisson-Nernst-Planck systems for ion channels with multiple ion species ⋮ Qualitative properties of ionic flows via Poisson-Nernst-Planck systems with Bikerman's local hard-sphere potential: ion size effects ⋮ A new Poisson-Nernst-Planck model with ion-water interactions for charge transport in ion channels ⋮ Adaptive finite element approximation for steady-state Poisson-Nernst-Planck equations ⋮ Non-localness of excess potentials and boundary value problems of Poisson-Nernst-Planck systems for ionic flow: a case study ⋮ Geometric singular approach to Poisson-Nernst-Planck models with excess chemical potentials: ion size effects on individual fluxes ⋮ Ion size effects on individual fluxes via Poisson-Nernst-Planck systems with Bikerman's local hard-sphere potential: analysis without electroneutrality boundary conditions ⋮ Poisson-Nernst-Planck systems for ion flow with density functional theory for hard-sphere potential: I-V relations and critical potentials. I: Analysis ⋮ Poisson-Nernst-Planck systems for ion flow with density functional theory for hard-sphere potential: I-V relations and critical potentials. II: Numerics ⋮ Fractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithms ⋮ Finite ion size effects on ionic flows via Poisson-Nernst-Planck systems: higher order contributions ⋮ Reversal Potential and Reversal Permanent Charge With Unequal Diffusion Coefficients via Classical Poisson--Nernst--Planck Models ⋮ Modeling and simulating asymmetrical conductance changes in gramicidin pores ⋮ An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions ⋮ A virtual element method for the steady-state Poisson-Nernst-Planck equations on polygonal meshes ⋮ Reversal permanent charge and concentrations in ionic flows via Poisson-Nernst-Planck models ⋮ Modeling and simulating asymmetrical conductance changes in gramicidin pores ⋮ Second-order Poisson-Nernst-Planck solver for ion transport ⋮ The immersed boundary method for advection-electrodiffusion with implicit timestepping and local mesh refinement ⋮ Asymptotic models for transport in large aspect ratio nanopores ⋮ Error analysis of finite element method for Poisson-Nernst-Planck equations ⋮ Dynamics of ionic flows via Poisson-Nernst-Planck systems with local hard-sphere potentials: competition between cations ⋮ Finite Domain Effects in Steady State Solutions of Poisson--Nernst--Planck Equations ⋮ Mathematical studies of Poisson-Nernst-Planck model for membrane channels: finite ion size effects without electroneutrality boundary conditions ⋮ Mathematical analysis of Poisson–Nernst–Planck models with permanent charges and boundary layers: studies on individual fluxes

This page was built for publication: Two- and three-dimensional Poisson--Nernst--Planck simulations of current flow through gramicidin A