Robust \(k\)-mer frequency estimation using gapped \(k\)-mers

DOI10.1007/s00285-013-0705-3zbMath1302.92102WikidataQ41877961 ScholiaQ41877961MaRDI QIDQ404003

Mahmoud Ghandi, Michael A. Beer, Morteza Mohammad-Noori

Publication date: 29 August 2014

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-013-0705-3

zbMATH Keywords

frequency estimation; DNA sequences; DNA sequence; statistical learning; oligomer; \(k\)-mer

Mathematics Subject Classification ID

15A09: Theory of matrix inversion and generalized inverses

92D20: Protein sequences, DNA sequences

92-08: Computational methods for problems pertaining to biology

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Cites Work

• A diagonal form for the incidence matrices of \(t\)-subsets vs. \(k\)- subsets
• Regression and the Moore-Penrose pseudoinverse
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