Petri net representation of multi-valued logical regulatory graphs

DOI10.1007/s11047-010-9178-0zbMath1217.68149OpenAlexW1973749796WikidataQ59211694 ScholiaQ59211694MaRDI QIDQ553914

Claudine Chaouiya, Elisabeth Remy, Aurélien Naldi, Denis Thieffrey

Publication date: 28 July 2011

Published in: Natural Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11047-010-9178-0

zbMATH Keywords

Petri netscell differentiationsignal transductionbiological networksgene regulationlogical modellingregulatory circuits

Mathematics Subject Classification ID

Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Genetics and epigenetics (92D10) Systems biology, networks (92C42)

Related Items

Boolean networks: beyond generalized asynchronicity ⋮ Optimal control of probabilistic logic networks and its application to real-time pricing of electricity ⋮ Concurrency in Boolean networks ⋮ Integrated regulatory networks (IRNs): spatially organized biochemical modules ⋮ Trap spaces of Boolean networks are conflict-free siphons of their Petri net encoding ⋮ On the conversion of multivalued to Boolean dynamics ⋮ Control Flow Analysis of Generalised Boolean Networks ⋮ Dynamically consistent reduction of logical regulatory graphs ⋮ Dynamical modeling and analysis of large cellular regulatory networks ⋮ Minimal trap spaces of logical models are maximal siphons of their Petri net encoding

Uses Software

• Ginsim
• INA

Cites Work

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• Applications and Theory of Petri Nets 2005