Automated neuron model optimization techniques: a review

DOI10.1007/s00422-008-0257-6zbMath1154.92013DBLPjournals/bc/GeitSA08OpenAlexW2012701167WikidataQ37326538 ScholiaQ37326538MaRDI QIDQ999387

W. Van Geit, P. Achard, Erik De Schutter

Publication date: 3 February 2009

Published in: Biological Cybernetics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00422-008-0257-6

zbMATH Keywords

Fitness functionError functionAutomated tuning

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Numerical optimization and variational techniques (65K10) Neural biology (92C20) Neural networks for/in biological studies, artificial life and related topics (92B20) Computational methods for problems pertaining to biology (92-08)

Related Items (12)

Numerical analysis of nonlinear model of excited carrier decay ⋮ Synapse fits neuron: joint reduction by model inversion ⋮ Feedback identification of conductance-based models ⋮ Low-dimensional models of single neurons: a review ⋮ Data assimilation methods for neuronal state and parameter estimation ⋮ Comparison of different neuron models to conductance-based post-stimulus time histograms obtained in cortical pyramidal cells using dynamic-clamp in vitro ⋮ Biophysically interpretable inference of single neuron dynamics ⋮ Reduced order models of myelinated axonal compartments ⋮ Special issue on quantitative neuron modeling ⋮ Unnamed Item ⋮ Unnamed Item ⋮ Automated Parameter Estimation of the Hodgkin-Huxley Model Using the Differential Evolution Algorithm: Application to Neuromimetic Analog Integrated Circuits

Uses Software

• NEURON
• Neurofitter

Cites Work

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• Optimization by Simulated Annealing
• On the use of Bayesian methods for evaluating compartmental neural models
• A parameter-space search algorithm tested on a Hodgkin-Huxley model
• Fitting experimental data to models that use morphological data from public databases
• A review of methods for spike sorting: the detection and classification of neural action potentials
• A comparison of simulated annealing cooling strategies
• Quasi-Newton Methods and their Application to Function Minimisation
• Finding Optimal Algorithmic Parameters Using Derivative‐Free Optimization
• Introduction to evolutionary computing

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