Statistical learning formulation of the DNA base-calling problem and its solution in a Bayesian EM framework

DOI10.1016/S0166-218X(00)00192-XzbMath0969.92016MaRDI QIDQ1585334

Elias S. Manolakos, Manuela S. Pereira, Lucio Andrade, Sameh El Difrawy, Barry L. Karger

Publication date: 6 November 2000

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

zbMATH Keywords

algorithms; chromosomes; signal to noise ratio; expectation-maximization algorithm; statistical learning; EM; DNA base-calling

Mathematics Subject Classification ID

62F15: Bayesian inference

92C40: Biochemistry, molecular biology

92-08: Computational methods for problems pertaining to biology

Uses Software

• BayesDA

Cites Work

• Application of expectation-maximization algorithm to the detection of a direct-sequence signal in pulsed noise jamming
• Maximum-likelihood localization of narrow-band autoregressive sources via the EM algorithm
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