Quarnet inference rules for level-1 networks

DOI10.1007/S11538-018-0450-2zbMath1398.92175arXiv1711.06720OpenAlexW2963639031WikidataQ64884675 ScholiaQ64884675MaRDI QIDQ1786927

Charles Semple, Taoyang Wu, Katharina T. Huber, Vincent L. Moulton

Publication date: 25 September 2018

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1711.06720

zbMATH Keywords

closureinference rulesphylogenetic networklevel-1 networkquartet treescyclic orderingsqnetquarnet

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of graph theory (05C90)

Related Items (6)

Identifiability of species network topologies from genomic sequences using the logDet distance ⋮ Combining Networks Using Cherry Picking Sequences ⋮ Phylogenetic Networks ⋮ Counting phylogenetic networks of level 1 and 2 ⋮ Identifying species network features from gene tree quartets under the coalescent model ⋮ The tree of blobs of a species network: identifiability under the coalescent

Uses Software

• QNet
• iTOL

Cites Work

• Unnamed Item
• Reconstructing the shape of a tree from observed dissimilarity data
• Reconstructing a phylogenetic level-1 network from quartets
• Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets
• Encoding phylogenetic trees in terms of weighted quartets
• A canonical decomposition theory for metrics on a finite set
• The complexity of reconstructing trees from qualitative characters and subtrees
• \(X\)-trees and weighted quartet systems
• Extension operations on sets of leaf-labelled trees
• Encoding and constructing 1-nested phylogenetic networks with trinets
• Recovering a phylogenetic tree using pairwise closure operations
• Basic Phylogenetic Combinatorics
• Tree structures for proximity data
• Leaf-Reconstructibility of Phylogenetic Networks
• Computing and Combinatorics

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